| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0288 |
|---|
| Symbol | |
|---|
| ID | 5170853 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 272411 |
|---|
| End bp | 273022 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640562791 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001243893 |
|---|
| Protein GI | 148269433 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 50 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGTTTTTG AGGTGAAAAA CATCGTTTTC GATCTTGGAG GGGTTCTGAT CGACTGGAGA
CCCTGTGAGT ACCTGCTCGA GTCCTTCCCG GAGGAAGTGG CGAGGGTCCT TGAAAAGGAG
ATCTTCAAAC ACGAGGACTG GAAGCTGATG GACAGAGGGG TTCTGCCTGA AAACGAGTTG
TGGGAAAAGA AAAAGAGAGA GCTTCCAGAG TTTAAAGAGT ACGTGGAAAG ACTCGAAAGG
GAAGTTCCAG AACTTTTGAG ACCCATCGAA GAGAACGTGA GACTGCTTCC AGCCCTGAAA
AAGAGCTTCA AGCTCTACGC TCTTTCCAAC TACGGAAAAA TCTACTTCGA GATGGTGAGA
AAGAAATACG ATTTCTTCAA GCTCTTCGAC GGCATGGTGA TTTCCTCTCA CGTGGGTTAT
CTGAAGCCGG AGAAAGAGAT ATACCTCGAA CTGATCAGAA GATACGGGAT CGCTCCGGAA
GAGAGCCTCT TCATAGACGA CACACCGGAA AACGTCGAGG CCGCAAGAGA ACTTGGTTTT
CGAGCTGTTC GTCTTGAAGA GCCGTCGAGA TTGAAAGAGA TTCTGACCAG AGAGCTGAAC
ATCGAATTGT GA
|
|---|
| Protein sequence | MVFEVKNIVF DLGGVLIDWR PCEYLLESFP EEVARVLEKE IFKHEDWKLM DRGVLPENEL
WEKKKRELPE FKEYVERLER EVPELLRPIE ENVRLLPALK KSFKLYALSN YGKIYFEMVR
KKYDFFKLFD GMVISSHVGY LKPEKEIYLE LIRRYGIAPE ESLFIDDTPE NVEAARELGF
RAVRLEEPSR LKEILTRELN IEL
|
|---|
| |