| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6546 |
|---|
| Symbol | |
|---|
| ID | 5153924 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 6831758 |
|---|
| End bp | 6832765 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640561245 |
|---|
| Product | ABC transporter substrate-binding protein |
|---|
| Protein accession | YP_001242360 |
|---|
| Protein GI | 148257775 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.280995 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTGA CCCGCTTTCT GCTCCCCATT CTGACCCTGC TCATGCTCGC GCTGCCCGCG
CCGAGCTTCG CCGAGGACGC ACCGAAGATC AAACTCGGCT ACGCCAAATG CGCGCATTGC
ACGCCGATGT CGCTGACACC GCAATTCGCG GAGGGCGTCG CCATCGATGC GGTCGGCTTC
AACACCGGCA CCGATGCGCT GACCGCTTTG GTGTCGAAGA ACATCGACGT CGCGCAGGTG
ACCTATCTGC ATTACGCCAT CGCGCTCGAT AAGGGCTTCG ATGTCGTCGC CATCTCCGGC
CAGGTCAATG GCGGCTCGGC GATCCTGCTC GGCAACGACC TCGATGTCGC GCAGGGCGAC
TGGGGCGCGC TGAAGGCGCT GATTGCCAAG TACAAGGCCG ACGGCAAGCC GTTCCGCGTC
GCCGCCTCGC GCGGCAATGC GCAGGACATC CACATGCGTG GCGCCTTCGC CAAGCAGGGC
ATCGACATCA ACAAGGATGT GCAGTTCGTC AACATCCCCA ATCCGTCCGA CCATCTGCAG
GCGCTGCGCC GCGGCGAGGT CGAGCTGATC TGCACCGTCG AGCCGTTCGC CACCCAGATC
ATGCAGGCCA AGGCCGCAAA ATTCTTCGGC TTCCCCTATG ACCAGGCCGC CGGCAAGCTG
ACCAACCTGA TCCTGACCCG CTCTGACGTG ATCGCCTCCA ACCCGAAGGG GCTCGAAGGC
GTGGTGCGCG CGGTGGTGAA GGTCGATGCG CATATCGCGG CCGACAAGCC GGCGCTGATC
GAGGTCATCT CCAAGGTCAC CGGCCTCGAC AAGGCGATCG CGACCGGTGC CGTCGAGAAC
CTCGATCCCG ATCCGAAGAT GTACCGTTCC TCCGCGCTCG CCATCGCCGC GATGATGCGC
GATCTCAAAT ACATCAACTC GGATGTCACG GCCGCGGTCG AGAAGAACCT CGACTACCGC
TTCCTGGAAG CGGCGACCGG CAAGCCGAAG ACCGAGCTCG GCTACTGA
|
|---|
| Protein sequence | MDVTRFLLPI LTLLMLALPA PSFAEDAPKI KLGYAKCAHC TPMSLTPQFA EGVAIDAVGF
NTGTDALTAL VSKNIDVAQV TYLHYAIALD KGFDVVAISG QVNGGSAILL GNDLDVAQGD
WGALKALIAK YKADGKPFRV AASRGNAQDI HMRGAFAKQG IDINKDVQFV NIPNPSDHLQ
ALRRGEVELI CTVEPFATQI MQAKAAKFFG FPYDQAAGKL TNLILTRSDV IASNPKGLEG
VVRAVVKVDA HIAADKPALI EVISKVTGLD KAIATGAVEN LDPDPKMYRS SALAIAAMMR
DLKYINSDVT AAVEKNLDYR FLEAATGKPK TELGY
|
|---|
| |