| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6514 |
|---|
| Symbol | |
|---|
| ID | 5155861 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 6792690 |
|---|
| End bp | 6793775 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640561213 |
|---|
| Product | TRAP-type uncharacterized transporter domain-containing protein |
|---|
| Protein accession | YP_001242329 |
|---|
| Protein GI | 148257744 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0948459 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCGCCGG CGCCCGGCAG CGGACCCGAT GTATGGCGGC TACCGAACCC GAACGACGTC
AACGACGGCA CGGTCACGAT CATCACGGCG CCGGCTGGCG GGGCGACCTC GGTGTTCGGC
TCGGACATGG CGCGCGTGCT CGACGATCAG TCCAACATTC GTGTGCTGCC GGTGCTCGGC
AAGGGGCCAG TCCGCAATGT CTCCGACATC CTGTTCCTCA AGAGCATCGA CATGGGCGCG
GTCGCCGCCG ACGTGCCTGA GTTCTATCGC CTGCAATACG GCATCCCGGA CATCACGTCG
CAGCTGCGCT ACGTCGCGCG GCTTTATTAT AATGAGGTCC ATGTCATCGC GCGGTCCTCG
ATCCGCTCGA TCTTCGATCT CAACGGCAAG CGGGTCATTG CGCCGACCGA TGTCGGGTTC
TATTCGGCGC GCGTGATCTT CAACCGGCTC GGCATGACCG CATCGTTCGA CTATTCGACC
GACGATGCGA AATCGATCCA GAAGCTGGTC GACGGCGAAG CCGACGCCTA CATCGTCTCG
ACCGGCAAAG TGTTCCAGCT CGCGCGCAAC ATCCGCAACG ACAATCGCGC GCTGCATCTG
GTGGCCATCC CCTACGACCG CCGTCTGCAG GATCTCTATC TGCCGACCAC GCTGTCGTCG
GAGGAATATC CCAACCTGCT CGGGTCTGGC GAGACGATCG AGACCGTGGC GATCGGCATG
CTGCTTGTCA GCTACAATTG GCCGGAGAAT ACCGAGCGCT ACCGCAAGGT CGCGCGCTTC
GTCGATGCGT TCTTCGCGAA CTACGACGAG TTCATGAAGC CGCCGCGGCA TCCGAAATGG
AAGGAGTCGA GCATCGTCGC CGCCGTTCCC GGCTGGAAGC GCTTCAAGGC GGCGGACGAG
TGGCTGGTCG CCCGCAACAT GGCGCCGCGG CCGCATGTCG CCGATGTCCA GCAGCGGCAA
TTCGAGGATT TCGTGCGCCA GAGCGGCGGT CAGGTGTCGA ACGATCCGGC CGAGCGCAGC
GCGCTGTTTC GGCAGTTCCT GCAATGGCGC CAGCAGCATG GCGGCCCGCC GGCGCCGACG
CGCTGA
|
|---|
| Protein sequence | MSPAPGSGPD VWRLPNPNDV NDGTVTIITA PAGGATSVFG SDMARVLDDQ SNIRVLPVLG
KGPVRNVSDI LFLKSIDMGA VAADVPEFYR LQYGIPDITS QLRYVARLYY NEVHVIARSS
IRSIFDLNGK RVIAPTDVGF YSARVIFNRL GMTASFDYST DDAKSIQKLV DGEADAYIVS
TGKVFQLARN IRNDNRALHL VAIPYDRRLQ DLYLPTTLSS EEYPNLLGSG ETIETVAIGM
LLVSYNWPEN TERYRKVARF VDAFFANYDE FMKPPRHPKW KESSIVAAVP GWKRFKAADE
WLVARNMAPR PHVADVQQRQ FEDFVRQSGG QVSNDPAERS ALFRQFLQWR QQHGGPPAPT
R
|
|---|
| |