| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6421 |
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| Symbol | ppsR1 |
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| ID | 5154437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 6689308 |
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| End bp | 6690735 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640561121 |
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| Product | Fis family transcriptional regulator |
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| Protein accession | YP_001242237 |
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| Protein GI | 148257652 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR02040] transcriptional regulator PpsR |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.180645 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAGGGCGT TCAGAGCTCC AAAAGAGTCG CTTGGCGATC TCAATGCGGA TGTCGCGGCC
ATGCTGGTGG CCGCAGCGTC CGACATTGCG CTCGCGCTCG ACGCCGACGG CAACATTCAG
GACCTGGCTT TTCAACAAGC CGGGCTACCG CTTGAATTGA GAAACACAGA CGAGTGGATC
GGCAGATCCT GGCAAGCAAC AGTGTCCGAG GAAAGCCAGA CCAAGCCAGA GCTGCTGCTC
GCCGAAGCCT CCCAGCGCAA GGTGTCGCGC TGGCGCGAGG TGCGTTATCC GGCCGCGCGC
GGGCCTGACA TTCCAATCCT GTTCGCGGTC GTGGCGATCA AGGGCGCGGC CCGCTTCATC
GCCGTCGGTC GCGATGTCCG CGCCACCGCC GCGCTCCAGC AGAAGCTGAT CGAGGCGCAA
GTGGCGATCG AGCGCGACTA CTCGCGCATG CGCAACGCCG AATCGCGCTA TCGGATCCTG
TTCCAGATCA CCTCCGAGCC GGTGCTGATC ATCGACGCGG TCAGCCATCG CATCGTCGAG
GCCAACCCCG CCGCAGCCGC CCTGCTCGAC CATGGCGCCG CCAATCTGAT CGGCAAGCTG
TTTCCCGACG CCCTGCTGAT CGACGACAAC GCGCTGTCGC AATCGCTGTC GCTGGCGATT
CGCTCCCAGG GCAAGATCGA GCGCGCCAAG ATCACGCTCG ACGGCGGCCG CGAATATCTG
CTCGACGGCA CCTTCTTCCG CCAGGATACG TCGTCGCTGT TCCTGCTGCG GTTCTCGCCG
CAGTCCACGC AGCCAGCCAT CGCCAAGGCG TCCGACGTCA ACACCCAGCT GGTGCAGTTC
GTCGAATCGG CGCCCGACGG CTTCGTCATC ACCGACATGG ACGGCAGACT GCTGCACGCC
AACGCCACCT TCCTGCAACT CGCCCAGATC GAGAACATGC ATCAGATCCT GGGCGAGACC
ATCGACCGCT GGATCGGCAA GTCGGCGATC GATTTCTCGG TCATGCTGAC CAATCTGCGC
CAGCACGGCA GCGTGAAGCT GTTCTCCAGC GTCGTCCGCG GCGAGCATGG CTCGCCGGTC
GATGTCGAAA TTTCCGCCAC CACGGTCGGC GCGCCCGGCC AGGCCCGGCT CGGTTTCACC
ATCCGCAATG TCGGCCCGCG CATCTCCAGC GACGGCGGCG ACCACGGCTA CATTCCGCGC
TCGCGCGAGC AGCTCGCGGA GCTGATCGGC CGGGTGCCGC TGAAAGAGCT CGTGCGCGAG
ACCACCGATG TGATCGAGCG AATGTGCATC GAGACCGCGC TCAAGCTGAC CGGCGACAAC
CGCGCCACCG CGGCCGAGAT GCTCGGGCTC AGCCGGCAGA GCCTCTACGT CAAGCTGCGG
CGCTACGGCC TCGCCGAGCC GAGCGAAGAA GACAGCCAGT TGGAATAG
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| Protein sequence | MRAFRAPKES LGDLNADVAA MLVAAASDIA LALDADGNIQ DLAFQQAGLP LELRNTDEWI
GRSWQATVSE ESQTKPELLL AEASQRKVSR WREVRYPAAR GPDIPILFAV VAIKGAARFI
AVGRDVRATA ALQQKLIEAQ VAIERDYSRM RNAESRYRIL FQITSEPVLI IDAVSHRIVE
ANPAAAALLD HGAANLIGKL FPDALLIDDN ALSQSLSLAI RSQGKIERAK ITLDGGREYL
LDGTFFRQDT SSLFLLRFSP QSTQPAIAKA SDVNTQLVQF VESAPDGFVI TDMDGRLLHA
NATFLQLAQI ENMHQILGET IDRWIGKSAI DFSVMLTNLR QHGSVKLFSS VVRGEHGSPV
DVEISATTVG APGQARLGFT IRNVGPRISS DGGDHGYIPR SREQLAELIG RVPLKELVRE
TTDVIERMCI ETALKLTGDN RATAAEMLGL SRQSLYVKLR RYGLAEPSEE DSQLE
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