| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6015 |
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| Symbol | betA |
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| ID | 5155628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 6235939 |
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| End bp | 6237651 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640560736 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001241858 |
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| Protein GI | 148257273 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.386009 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.639563 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAAAC ACGAGGCAGA GTTCGACTAT GTCATCGTCG GTGCCGGGAG TGCGGGATGC
GTTCTGGCGA ACCGTTTGAC GGAAGATCCG AACGTCAAGG TTGCGATCCT CGAGGCGGGG
GGCCGAAACA AATCCCTCAT GCTGAGAATG CCGGCGGCCA TAGGCGACAT CTTCATGCAG
AAGGGACCGG CGAATTGGAT GTTCCAGACC GTCCCTCAAG GCACGTTGGA CGCGCGGCGT
CTGTATCAGC CGCGCGGACG AGGTTGGGGA GGATCCTCCG CCATCAACGG CATGCTCTAC
GTACGCGGCC ACGCGCGCGA CTACGACCAA TGGCGGCAAA CCGGCCTGAC CGGCTGGGGT
TATGCCGATG TGTTGCCGTA TTTCAAGCGA GCCGAGCATA ACGAGAATGG CGGCGACACG
TGGCGGGGCG ACCGCGGCCC TCTCTGGGTC TCGGTTGGCC CGAACGGCAA TCCGCTCTAC
CGCGCGTTCA TCAACGCCGG ACGGCAGGCC GGCCATCCCG TCACGCGCGA TTTCAACGGA
TATCAGCAGG AGGGGCTCGG GCCGTTCCAC CTCACGATCA AAGACGGCGA ACGCTGCAGC
GCAGCATCGG CCTATCTGGA ACCGGCGATC CGGGACCGGC GAAATCTCGC CGTGTTGTCC
CATGCCCACG CGATGAAGAT CATCATCGAG AACGGCGAAG CCAGAGGCGT GCAATACGCG
TCCGGTCGCA TGAAGGTCGT GAAGACCGTG CGCGCCCGAC GTGAAGTGAT CCTCTCGGCC
GGGGTCTTCC AGAGTCCGCA ACTGCTGATG CTGTCGGGCA TCGGTCCTGC CGACGCGCTG
CGGCGGCATG GCATTTCGGT CGTCCACGAC GCCCCCGAGA TAGGACAGAA CCTGCAGGAC
CATTTCGATG TGGTGATGAG CTATCGATGC ACCAAGCCCA TCACCGCTCA TTCGTTCATC
ACGGGATATC GCAAGATTCT GCTGGGCCTG GAATATCTGC TGTTCCGGAC CGGTCAGGGA
CGCACCAACC ACGTTCAGGC CGGCGCGTTT CTCAAGTCCC GCACAGAACT GGATCGGCCT
GACATCCAGT TGCACTTCGC CAATGTCATG CTCCTCAATC ATCAGCCGCT GAAAACCCAT
TCTCATGGCT TCGGTCTTCA CGTCTGTCAG CTACGCCCTG AGAGCCGCGG CGAGATGCGG
CTGGCGTCCC CTGATCCCTT CGCTGCGCCG ATCATCGATC CGCGATATCT CTCCTCCGAG
ACCGATCGGC GCACGATCCG CGACGGTGTG AGGATGGTTC GCGAGATCGT TCAGCAAGAC
GCCTTGAGAA TGTATCGCGG GCCGGAAGTG CATCCGGGCC TTGATGTGCA GACCGACTCC
GAGATCGACG CGTGGACGCG CCAGACGGGA CAATCCATCT TTCATCCTGT CGGCACCGTC
CGCATGGGCG CAGACGCCAA CGCGCCGGTC GGGCCGGACT TGGCGCTGCG CGGGGTGAGG
CGGCTGCGCG TCGTTGACGC CTCCGTCATG CCGACATTGG TCGGCGGCAA CACGAACGCG
GCGACGATCA TGATCGCTGA AAAGGCTGCC GATATGGTGC GGGGGCGCCC ACCATTGTCG
CGCGAAGAAG CACCGATTGC CGAGGACGTC GCAATCTCCC ACCGCGTGCA GGTCCAGCGC
TTCGCGTCGG GCACCGCGGT GGCGTTCAAT TAG
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| Protein sequence | MPKHEAEFDY VIVGAGSAGC VLANRLTEDP NVKVAILEAG GRNKSLMLRM PAAIGDIFMQ
KGPANWMFQT VPQGTLDARR LYQPRGRGWG GSSAINGMLY VRGHARDYDQ WRQTGLTGWG
YADVLPYFKR AEHNENGGDT WRGDRGPLWV SVGPNGNPLY RAFINAGRQA GHPVTRDFNG
YQQEGLGPFH LTIKDGERCS AASAYLEPAI RDRRNLAVLS HAHAMKIIIE NGEARGVQYA
SGRMKVVKTV RARREVILSA GVFQSPQLLM LSGIGPADAL RRHGISVVHD APEIGQNLQD
HFDVVMSYRC TKPITAHSFI TGYRKILLGL EYLLFRTGQG RTNHVQAGAF LKSRTELDRP
DIQLHFANVM LLNHQPLKTH SHGFGLHVCQ LRPESRGEMR LASPDPFAAP IIDPRYLSSE
TDRRTIRDGV RMVREIVQQD ALRMYRGPEV HPGLDVQTDS EIDAWTRQTG QSIFHPVGTV
RMGADANAPV GPDLALRGVR RLRVVDASVM PTLVGGNTNA ATIMIAEKAA DMVRGRPPLS
REEAPIAEDV AISHRVQVQR FASGTAVAFN
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