| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5659 |
|---|
| Symbol | |
|---|
| ID | 5156069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 5900829 |
|---|
| End bp | 5901671 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640560397 |
|---|
| Product | putative O-antigene/LPS export system permease protein |
|---|
| Protein accession | YP_001241519 |
|---|
| Protein GI | 148256934 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.85695 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCC TGACCGATGG ACAGGTCGAG CGGCTCGTGG TTGCGGAGCA GCGCCGCTTT
TCCTGGGCGC GCTGCCGCAA CGACATCGCC CCGTTCGTCA CCCGTCACGT CACTTGGCGC
GCACTCGCCG CCGGCGATAT CCGTTCGAAA TACCGCCGCA CGCTGCTCGG CCCGTGGTGG
ATCACGGCCA CGAACGCGAT CACGGCGCTG ATCATGGGCA CCGTGGCCGG CCGGTTCCTC
GGCGCCGACA TGAAGACCTA TCTGCCGCAC TTCATGGTCA GCATGACGAT CTGGAGCTTC
ATTTCCTCGT CGCTCAGCGA ATCCTGCTTC ACGATGATCA ATGCGGGCGG CATGATCAAA
GCGGTGGATA TGCCGATCCT GATCCACGTC ATGCGCATGG TTCAGCGCAA TCTGATCATC
TTTCTGCACA ACATCGCCGT CATTCCTTTC ATCTGGCTCG TCTACCCCTG GTCGGTCGGA
TACGGTGCCG TGCTCGCGAT CGCCGGCTTG ATGATCGTCT ACGTCTTCGT CGTCAGCGCG
TCGGTGATCG TATCGATGAT CTGCGTGCGC TATCGCGACG TGCCGCCGGT GATGGCAGCC
GTGCTGCAGC TGTTGTTCTT CATCTCTCCG ATCATCTGGG AGCCGTCGAA GATCCAGGGA
GGCGAGTTGG TTGTCGCCCT CAATCCGATC GCCTATCTAT TGGCGGTCAC GCGTGGCCCG
CTGATGGGAG ACGTCCCCAA CCTCGCGACC TGGGCCGGTG CCATCGGATC GGTAGCCGTC
TTGACGGCTG CGATGATCTA CATCTACACG CGCTATCGCT CGCGCGTCGT GTACTGGGCC
TGA
|
|---|
| Protein sequence | MTTLTDGQVE RLVVAEQRRF SWARCRNDIA PFVTRHVTWR ALAAGDIRSK YRRTLLGPWW
ITATNAITAL IMGTVAGRFL GADMKTYLPH FMVSMTIWSF ISSSLSESCF TMINAGGMIK
AVDMPILIHV MRMVQRNLII FLHNIAVIPF IWLVYPWSVG YGAVLAIAGL MIVYVFVVSA
SVIVSMICVR YRDVPPVMAA VLQLLFFISP IIWEPSKIQG GELVVALNPI AYLLAVTRGP
LMGDVPNLAT WAGAIGSVAV LTAAMIYIYT RYRSRVVYWA
|
|---|
| |