| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5116 |
|---|
| Symbol | |
|---|
| ID | 5153085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 5342077 |
|---|
| End bp | 5344038 |
|---|
| Gene Length | 1962 bp |
|---|
| Protein Length | 653 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640559891 |
|---|
| Product | putative 1,4-alpha-glucan branching enzyme |
|---|
| Protein accession | YP_001241019 |
|---|
| Protein GI | 148256434 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.203734 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATGC TGCTGGAACC TGTTACGCTG CCGCCATTCC CCGAAGGATT GAGGATTTCG
CTGCGGCAGA TGCATCTTCT CCAGGCTCCC ATGGGCGGTA CCCTGGTGAC CGGCGGCGCC
ACGTTCCGTG TGTTCGCGCC GCATGCCAGG GCGGTCTACG TCTCCGGCCC GTTCAACGAT
TGGGCGCAGG ATGCGAGCTG CCGGCTGGCG CCGATCGGCA ACGGCCATTG GGCGGTCTTC
ATCCCCGGGC TGAAGGACGG CGACGCCTAC ATGTATTTCG TCGAGGGCGA GGGCTCCTCG
GGCTACAAGC GCGATCCGCA TGCGCGCCTG CTCACCGTGG ATCCGCCATT TCCACAGGCG
CATTCCGTGC TGCGCAATCC CCAGGCGTTT CCCTGGCACG ATACTGACTT CACGCCGCCG
CCGTGGAACG AGCTCTTGAT CTACCAGCTT CACGTCGGCA GCTTCGACAT GAAGGCGGGC
AATCCCGACG GCTGCTTCTT CGACGTGATC GAGCGCGTGC CGCATCTGGC CAGGCTCGGC
GTCAACGCCA TCGAACTGCT GCCGGTGCAG GAATTCCCGA CCATGTTCAG CATGGGCTAC
AACGGCACCG ATCTGTTCAG CCCGGAAACC GAGTATGGCG AAGCCGAGGA GACACATCTC
GCGGCCTATT TCACGCGCAC CAACGAGATC CTTGCGGCGG CGGGCGCCGC GCCTTACGCT
GATATCAATG TGGTCAGACA TTGCGACGAC CAGCTGCGCG CGCTGATCGA TGTCTGCCAT
GTCCATGGCA TCGCCGTGCT GTTCGACGTC GTCTACAATC ATGCCGGCGG CGGTTTTGAC
GAGAACAGTA TCTGGTTCTT CGACCGCCAG CCTTACGGCG ATCCCAATCG CAGCCTGTAT
TTCACCGACC AGGGCTGGGC TGGCGGGCAG GTGTTCGCCT ATTGGAATGC CGATGTGCGG
CAGTACCTCG TCGACAACGC CATCATGTTC TATCGCGAAT ATCACGCCGA CGGCCTGCGC
TTCGACGAGG TCAGCGTGAT GGATCGCTTC GGCGGCTGGG CGACCTGCCA GCAGCTCACC
GAGGCGCTGC GCGCCGAGAA GCCGGACGCG ATCCAGATCG CCGAATACTG GCCGGTCAAT
CCCTGGGTGG TGAAGGACAT CGCGCAAGGC GGCGCCGGTT TTGACGCGAC CTGGAGCGAT
GGCCTGCGGC TCGCCTTGCG CGGCGCGATC GCCAGCGCGG CCGGCGGCGC GGGAGCGCTC
GTTCCAATGC AGCCGATCGC AGCCGCGATC GCCGATCTCA GCCTCGACAA GCGGTGGCGC
GCGGTCAATT CGATCGAAAA CCACGACATC GTCTATGCCG GCCGCGAGCC GCGCATCCCG
CGTCTCGCTG ATCCGGTGAA CAGCCGCTGC TGGTATGCGC GCAGCCGCAG CCGCGTCGCC
ACGGGATTGC TGCTGACCGC GCCGGGCATC CCGATGCTGT TCATGGGCCA GGAGCTGTTC
GAGGACCGGC CCTGGAGCGA CACGCCGAGC CTGGACACCA CGATCCAATG GCCGCTGCTC
GACGGCGAGG ACAAGATCAC GGCGGACGCC GTGCGCTTCA CGGCCGAGCT GATTGCCATC
CGCCGTTCCC ATCCGGCGCT GACCGCCGAA GGCTGCGCCA TCGTCCACGC CCATGACGGC
AACCGCGTGC TCGCCTTTCA CCGCTGGGAC GGCCAGGGCG ACGACGTCAT CGTCATCGTG
AGTTTGAATG AGACACCGTG GCGCGACTAC GCGATCGGCT TCCCGGCGCC TGGGCAGTGG
CACGAGGTGT TCAACAGCGA CGTCTATGAT AACTGGGTCA ATCCCGGCGT CGTCGGCAAC
AACGGCGCGG TGACCGCCAG CGGCCCCGCG CTGCATGGGC AGCCGAGCTC GGCCATGGTG
ACGATCCCGG CGAACGGTCT GCTGGTGTTT GCGCGGGGGT GA
|
|---|
| Protein sequence | MDMLLEPVTL PPFPEGLRIS LRQMHLLQAP MGGTLVTGGA TFRVFAPHAR AVYVSGPFND
WAQDASCRLA PIGNGHWAVF IPGLKDGDAY MYFVEGEGSS GYKRDPHARL LTVDPPFPQA
HSVLRNPQAF PWHDTDFTPP PWNELLIYQL HVGSFDMKAG NPDGCFFDVI ERVPHLARLG
VNAIELLPVQ EFPTMFSMGY NGTDLFSPET EYGEAEETHL AAYFTRTNEI LAAAGAAPYA
DINVVRHCDD QLRALIDVCH VHGIAVLFDV VYNHAGGGFD ENSIWFFDRQ PYGDPNRSLY
FTDQGWAGGQ VFAYWNADVR QYLVDNAIMF YREYHADGLR FDEVSVMDRF GGWATCQQLT
EALRAEKPDA IQIAEYWPVN PWVVKDIAQG GAGFDATWSD GLRLALRGAI ASAAGGAGAL
VPMQPIAAAI ADLSLDKRWR AVNSIENHDI VYAGREPRIP RLADPVNSRC WYARSRSRVA
TGLLLTAPGI PMLFMGQELF EDRPWSDTPS LDTTIQWPLL DGEDKITADA VRFTAELIAI
RRSHPALTAE GCAIVHAHDG NRVLAFHRWD GQGDDVIVIV SLNETPWRDY AIGFPAPGQW
HEVFNSDVYD NWVNPGVVGN NGAVTASGPA LHGQPSSAMV TIPANGLLVF ARG
|
|---|
| |