| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4875 |
|---|
| Symbol | |
|---|
| ID | 5153450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 5115636 |
|---|
| End bp | 5116280 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640559672 |
|---|
| Product | HTH-type transcriptional regulator |
|---|
| Protein accession | YP_001240803 |
|---|
| Protein GI | 148256218 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1396] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.256136 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0946557 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGC AGGTCGAGCG GACGCCGGAG AACGGCGCGT CGCTCTCGCC CAGTGGCGCG
TTGCCGCCGG ACTCGCAGGC CGATCTTCAC ATCGTGCTCG GACGCAATTT GCGCCGCTTA
CGCACGCGGC GCGGCCATTC GCTGGAGCGG CTGGCGCGGC AGTCCGGGGT CAGCCGGGCC
ATGCTCGGGC AGATCGAAAC CGGCAAGAGC GTCCCGACCA TCAGCGTGCT CTGGAAAATC
GCCAATGCGC TGGATGTTCC CTTCGCCCAG TTGCTCGAAG GCGAGACGTC CCGCGGTCCC
TGCATCCTGC GCGGCTCCGA CGCCAAGCTC TTGAGCTCGA ATAGCGGCAA GTTCATCTCG
CGGGCGCTGT TTCCGTTCGA GGGCAGCCGG ACCGTGGAGT TCTACGAGCT GCGCATCGCG
CCGCTGCACC GGGAAACCGC GGAGGCGCAC GCACCGGGGA CGCGGGAGAA TCTGTTCGTG
GCGAAAGGCG TGATCGAGAT TGCGGTCGGC AGCGACAAGC CGATGACGCT CGCCGAAGGC
GATGCCGCGC TGTTCGAGGC CGATGCGCCG CATGTCTACC GCAACCTGGT GACCAGCGAA
GCGGTGCTCT ATCTCGTTAT GACCTATGCC GAGCGCGTCT CCTGA
|
|---|
| Protein sequence | MSEQVERTPE NGASLSPSGA LPPDSQADLH IVLGRNLRRL RTRRGHSLER LARQSGVSRA
MLGQIETGKS VPTISVLWKI ANALDVPFAQ LLEGETSRGP CILRGSDAKL LSSNSGKFIS
RALFPFEGSR TVEFYELRIA PLHRETAEAH APGTRENLFV AKGVIEIAVG SDKPMTLAEG
DAALFEADAP HVYRNLVTSE AVLYLVMTYA ERVS
|
|---|
| |