| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3160 |
|---|
| Symbol | |
|---|
| ID | 5149827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 3310648 |
|---|
| End bp | 3312366 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640558028 |
|---|
| Product | putative flagellar hook-associated protein 2 (HAP2, fliD protein) |
|---|
| Protein accession | YP_001239181 |
|---|
| Protein GI | 148254596 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1345] Flagellar capping protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0737875 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0817319 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTGA GCAGCGCGAC CTCAAGCACG AGCAGCACGA CGTCGTCGTC TTCCTCCTCG
TCGACGACGA GTTCGAGCAG TTCGCTCACA ACGTCGGGAA CGAGCACCAC GAGCACGATC
GACTGGACTG CTCTGATCCA ATCCGCCGTC GACGCCAAGC TCACCCAGGC GACGCAGATC
TCGACCAAGA TCACGTCGAA CGAGGCGAAG ATCACGGCCT ATCAGACGCT GCAGACCGCG
TTGAAGACGT TGTCTTCAGG CTTGTCGTCG CTGGCTACCT CGATGGTGAA CTCGCTCGCG
ACCAACGTCT TCGCGACCCG GGCGGCCACG ATCAGTGCGA CGGGGGACGT CAGCGCGTCG
TCGGCCCTCT CGATGTCGGT AAACAATGGT GCGGCGACCG GCAGCCACAC CCTGACTATC
AGCCAGATCG CCACCGCGCA CAAGGTTGCC GGAACGACCC AATCCAGCCA GACCACGGCG
CTCGGCTATT CCGGAACGTT CTCGCTTGGC CTGTCGGGCG GCACCACCGC CGACATCACG
GTCACGAGCG ACATGTCGCT GCAGGACGTC GTCGACGCGG TCAATGCCCA GACCTCAACG
ACGAATGTCG AGGCGTCCAT CGTTCAGGTC TCGAGCGGGT CATACGAGCT GGTGCTGACC
GGCACGGAGG ATGCCGCCGA CATTACTTAT TCCAGCTCGT CCGGCGATGA CATCCTCAAC
AAGCTCGGGG TGACTGACAG CTCCGGCGCT TTCGCCACCG TGCTGCAGAC CGCGCAGGCG
GCGGAGTTCA CGCTCGACGG AATCAGCCTG ACCCGCAACA CTAACGACAT CACCGACGTT
CTCAGCGGCG TCACCTTCGA TCTTCTGCAG GCGACACCGT CCGGAACGAC ACTCAACATC
AGCATCGGCA CAGATACCAG CCAGATTTCG TCGGCGCTGC AAACATTCGT CACCAACTAT
AATGCTTTCC GTGATGCGGT GATCGCGCAG CAGACGACGA ATTCGGATGG CACCGCGGCC
TCGAGCGCGG TGCTGTTCGG CGACGGCACC ATGCGCGACA TCATGAACAC GCTCCAGGAT
GTGCTGGGAA CCTCGGTCGG CGGTCTGACG ATGGCGGATC TCGGCCTGTC CTTCAACGAG
AAGAATGAGC TTGAGCTCGA CACGGGCACC TTGTCGACGA TCCTCAGCAC CAATCTGAGC
GGTGTCACCA CATTGCTGTC GGCCCAGACC AAGACGTCGT CCAGCCAGCT CAGCGTCGTG
AATACCGGAA CGTCGCCGCA ATCCTTCACG CTGGATCTCA CGGTGGATTC GTCGGGCAAT
CTCACGGCGG CCTCGGTCGG CGGCGACAGC TCCCTGTTCA CCGTCAGCGG CAACACGATC
GTCGGCAATT CCGGGACGGC CTATGCGGGC ATGGCCTTCA CCTATACCGG CTCGACCTCG
CAGTCGATCA CGGTGACCTC CACCCAGGGG CTGGCGACGC AGATCTACCA GTTTGCCAAG
ACAGCCTCGT CGACCACCGG ATCGCTGCAG ACGCTGATCG ACAATCTCAC GTCGCGCGAC
GAGACGCTGC AGGCGAAGGT CGATGACATC AAGAGCGCGG CTGCGACGTA TCAGACCCAG
CTCACGGCGC AATACGCCAA GTACCAGGCG GCCATCGAGA GCGCCAACAA CACGCTGACC
TATCTGAAAG CCCTTCTCAA CGCGAGTTCG AGTAACTGA
|
|---|
| Protein sequence | MTVSSATSST SSTTSSSSSS STTSSSSSLT TSGTSTTSTI DWTALIQSAV DAKLTQATQI
STKITSNEAK ITAYQTLQTA LKTLSSGLSS LATSMVNSLA TNVFATRAAT ISATGDVSAS
SALSMSVNNG AATGSHTLTI SQIATAHKVA GTTQSSQTTA LGYSGTFSLG LSGGTTADIT
VTSDMSLQDV VDAVNAQTST TNVEASIVQV SSGSYELVLT GTEDAADITY SSSSGDDILN
KLGVTDSSGA FATVLQTAQA AEFTLDGISL TRNTNDITDV LSGVTFDLLQ ATPSGTTLNI
SIGTDTSQIS SALQTFVTNY NAFRDAVIAQ QTTNSDGTAA SSAVLFGDGT MRDIMNTLQD
VLGTSVGGLT MADLGLSFNE KNELELDTGT LSTILSTNLS GVTTLLSAQT KTSSSQLSVV
NTGTSPQSFT LDLTVDSSGN LTAASVGGDS SLFTVSGNTI VGNSGTAYAG MAFTYTGSTS
QSITVTSTQG LATQIYQFAK TASSTTGSLQ TLIDNLTSRD ETLQAKVDDI KSAAATYQTQ
LTAQYAKYQA AIESANNTLT YLKALLNASS SN
|
|---|
| |