| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_3108 |
|---|
| Symbol | |
|---|
| ID | 5150243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 3256570 |
|---|
| End bp | 3257574 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640557978 |
|---|
| Product | putative formyl-CoA transferase |
|---|
| Protein accession | YP_001239132 |
|---|
| Protein GI | 148254547 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | [TIGR03253] formyl-CoA transferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.14895 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTGGTCG AGAATTTCGG CCCCGGCGTG CTCGACCGCA TGGGCTTCCC CTGGGAGAAG
ATCCAGGCCA TCAACCCGAA GATGATCGTC GCCTCGATCA AGGGGTTCGG CCCTGGCCCC
TACGAGGACT GCAAGGTCTA CGAGAACGTC GCGCAGTGCA CCGGCGGCGC CGCCTCGACC
ACCGGCTTCC GTGACGGCCT GCCGCTGGTC ACCGGCGCGC AGATCGGCGA TTCCGGCACC
GGCCTGCACC TCGCGCTCGG CATCGTCACC GCGCTCTATC AGCGCACCCA TACCGGCAAG
GGCCAGCGCG TCACGGCTGC GATGCAGGAC GGCGTGCTCA ACCTCTGCCG TGTCAAGCTG
CGCGACCAGC AGCGCCTGGA GCGCGGCCCG CTCAAGGAAT ACAGCCAGTT CGGTGAGGGC
GTGCCGTTCG GCGACGCCGT GCCGCGCGCC GGCAACGATT CCGGCGGTGG CCAGCCGGGC
CGCATCCTGA AGTGCAAGGG CTGGGAGACC GACCCGAACG CCTACATCTA CTTCATCACC
CAGGCCCCGG TCTGGGAGAA GATCTGCGAC GTGATCGGCG AGCCCACCTG GAAGACCGAT
CCGAACTACG CCAAGCCGGC CGCCCGCCTG CCGCGCCTGA ACGAGATCTT CGGCCGCATC
GAGCAGTGGA CCATGACCAA GACCAAGTTC GAGGCCATGG ACATCCTCAA CGAGTTCGAC
ATCCCCTGCG GCCCGATCCT GTCGATGAAG GAGATCGCCG AGGACGAGTC GCTGCGCAAG
ACCGGCACCC TGGTCGAGGT CGACCACCCG ACCCGCGGCA AATATCTCTC GGTCGGCAAC
CCGATCAAGC TGTCGGACAG CCCGGCCGAG GTGACCCGCT CGCCTTTGCT CGGCGAGCAC
ACCGACGAGA TCCTGCGCCA GGTGCTTGGC TTCAGCGACC ACCAGGTCGC CGAGATCCAC
GATTCCGGCG CGCTCGATCC ACCGCGCAAG GAAGCGGCGG AGTAA
|
|---|
| Protein sequence | MLVENFGPGV LDRMGFPWEK IQAINPKMIV ASIKGFGPGP YEDCKVYENV AQCTGGAAST
TGFRDGLPLV TGAQIGDSGT GLHLALGIVT ALYQRTHTGK GQRVTAAMQD GVLNLCRVKL
RDQQRLERGP LKEYSQFGEG VPFGDAVPRA GNDSGGGQPG RILKCKGWET DPNAYIYFIT
QAPVWEKICD VIGEPTWKTD PNYAKPAARL PRLNEIFGRI EQWTMTKTKF EAMDILNEFD
IPCGPILSMK EIAEDESLRK TGTLVEVDHP TRGKYLSVGN PIKLSDSPAE VTRSPLLGEH
TDEILRQVLG FSDHQVAEIH DSGALDPPRK EAAE
|
|---|
| |