| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_2688 |
|---|
| Symbol | |
|---|
| ID | 5149569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 2780644 |
|---|
| End bp | 2782347 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640557581 |
|---|
| Product | putative acid-thiol ligase |
|---|
| Protein accession | YP_001238735 |
|---|
| Protein GI | 148254150 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | [TIGR02262] benzoate-CoA ligase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.135272 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTCTG CCGCCAGTGC TCAGATCCAC GACGAGGCTC AACTTCCGGA CGGAACGAAG
GCGCATAGCG CCCACGTCGA CACGTTCGCG CAGGACCATC TGCCGCCGCG CGAGCTGTGG
CCCGACTTCG TTTTCAGCCG GCCGGAATAC CAGTATCCGC CGCGCCTGAA CTGCGTGACC
CATTTCGTCG ACCGCTGGGT CGAGGAGGGG CGGGGCGACG CGCCATGCAT CATCAGCGCG
GAGGTGAGCT ACACCTATCG CGAGCTTCAG GCGCTGGTGA ACAGGATCGC CAACGTGCTC
GTCGGCAGGC TCGGCCTCGT GCCCGGCGGC CGCGTGCTGC TGCGCTCTGC CAACAATCCG
ATGATGGTGG CGACCTATCT CGCCGTCATC AAGGCGGGTG GGATCGTCGT CGCCACCATG
CCCCTGCTGC GTGCGAAAGA GCTGTCCTAC CCGATCCAGA AGGCGCAGAT CGCCCTGGCG
CTTTGCGACG GCAAACTTTC GGATGAGATG GAAAAGACCC GTGCGGTCGC GCCCGCGCTG
CAAAAGGTGG TGTATTGGGG CAGCGGCCAG CCCGATGGCT TGGAGGCCTT GATTGCGGAT
GCCAGCCCCG ACTTCAAGGC GGTCGATACG GCGTCCGATG ATCTCTGCCT GATCGCCTTT
ACCTCGGGGA CGACTGGCGA TCCCAAGGGC ACCATGCATT TCCACCGCGA CATGCTCGCG
GTGTGCGATG GCTATGCCCG CAACGTGCTG CGTGCCAACC AGAGCGACCG CTTCATCGGC
ACGGCGCCGC TGGCTTTCAC CTTCGGCTTC GGCGGCGTGC TGTTTCCGAT GCATATCGGC
GCATCCTATG TCGTGCTCGA AAAGACCTCG CCCGACGATC TCCTCGCCGC CATCGAGCGC
TACAAGGCCA CGATCTGCTT CACGGCGCCC ACGGCCTATC GGGCCATGCT TGCCAAGCTT
GGGGGGCGCG ACATCTCCTC GCTGCGCAAA TGCGTCTCGG CCGGCGAGAC GCTGCCAAAG
CCGACCTTCG ACGCCTGGCT CAAGGCCACC GGGCTGAAGC TGATGGATGG CATCGGCTCG
ACCGAGATGC TGCACATCTT CATCAGCGCC GTCGAGGACG AGATCCGGCC CGGGGCGACC
GGCAAGCCGG TGCCGGGTTA TGAGGCGAAG ATCGTCGATG ACGAGGGCCG TGACGTGCCG
CCGGGGACGA TGGGACGCCT CGCGGTGCGC GGGCCGACCG GCTGCCGCTA TCTCGCCGAC
GAGCGCCAGC GCAAATACGT CCAGAACGGC TGGAACGTCA CCGGCGACAC CTATGTCATG
GATGACGACG GCTACTTCTG GTACCAGTCG CGGTCGGATG ACATGATCGT CTCGTCCGGC
TACAACATCG CCGGCACGGA CGTCGAGGCG GCGCTGCTGA CCCACCCGTC GGTGGCCGAA
TGCGGCGTGG TCGGTGCGCC GGACGAGGCC CGCGGCATGA TCGTGAAGGC CTATGTCGTG
CTGGCGCCGG GCGTGGCGGG CACCCCTGCG CTGGTCGCCG AGCTTCAGGA GCATGTGAAA
CGCGAGATCG CGCCCTACAA ATATCCGCGG GCGATCGAAT TCGTGACGCA GTTGCCGAAG
ACCGAGACCG GCAAGCTCAA GCGGTTTGCC TTGCGGCAGA TTGCGCAAGC CGCAACCTCG
CCGTCGTCCG GCACTGCCGC GTAG
|
|---|
| Protein sequence | MASAASAQIH DEAQLPDGTK AHSAHVDTFA QDHLPPRELW PDFVFSRPEY QYPPRLNCVT
HFVDRWVEEG RGDAPCIISA EVSYTYRELQ ALVNRIANVL VGRLGLVPGG RVLLRSANNP
MMVATYLAVI KAGGIVVATM PLLRAKELSY PIQKAQIALA LCDGKLSDEM EKTRAVAPAL
QKVVYWGSGQ PDGLEALIAD ASPDFKAVDT ASDDLCLIAF TSGTTGDPKG TMHFHRDMLA
VCDGYARNVL RANQSDRFIG TAPLAFTFGF GGVLFPMHIG ASYVVLEKTS PDDLLAAIER
YKATICFTAP TAYRAMLAKL GGRDISSLRK CVSAGETLPK PTFDAWLKAT GLKLMDGIGS
TEMLHIFISA VEDEIRPGAT GKPVPGYEAK IVDDEGRDVP PGTMGRLAVR GPTGCRYLAD
ERQRKYVQNG WNVTGDTYVM DDDGYFWYQS RSDDMIVSSG YNIAGTDVEA ALLTHPSVAE
CGVVGAPDEA RGMIVKAYVV LAPGVAGTPA LVAELQEHVK REIAPYKYPR AIEFVTQLPK
TETGKLKRFA LRQIAQAATS PSSGTAA
|
|---|
| |