| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1504 |
|---|
| Symbol | |
|---|
| ID | 5151853 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 1592087 |
|---|
| End bp | 1592821 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640556471 |
|---|
| Product | conjugal transfer protein TrbJ |
|---|
| Protein accession | YP_001237629 |
|---|
| Protein GI | 148253044 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
|---|
| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.135113 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGCC TGTGTCGTCT TGCCGCCGTC GGCGTCATTG CGGTCACCCT AATCGTTGGC
TGCAGGCCTT GTTCGGCGCA GTTGGTTGTG TTCGACCCCA ACAATTATGC GCAGAACGTG
CTGACTGCAG CTCGTACCCT GCAACAGGTC AACAACCAGA TCGTGTCGCT GCAAAATCAG
GCGCAGATGC TGATCAACCA GGCGAAGAAT TTGGCCACGC TGCCGTTTTC GTCGTTGTTG
CAGCTGGAGC AATCGATCCT GCGAACCCAG CAGCTTCTCG CCCAAGCTCA GCGCATCGCC
TATGACATCC AGCAGATCGA TCGTGCTTTC TCTACGACCT ATGCGTCCGC ATCATCGAGC
GTTTCGGACC AGGCGTTGAT AGCGAACGCG CAAAGCCGTT GGCAGAATGC AATGGCGGGC
TTGCAGGATG CTTTGCGGAC ACAAGCCACG GTCGTCGGCA ACCTCGACAC CAACCGCACC
GAGATGTCCG CTCTTGTCAC CTCGAGCCAG GGGGCGACCG GCGCGCTGCA AGCGGCCCAG
GCCGGCAATC AGCTTTTGGC GCTGCAGGCC CAGCAGCTTG CCGATCTCAC GGCGGTCATC
GCGGCTCATT CGCGCGCACA AAACCTGGAG TCCGCGCAGC ATGCGGCCGC CCAGGACCAG
GGCAGGGAGC AACTGCGGCG TTTCCTGACC CATGGCGCCG GCTATCAACC CACAACCGTG
CAGATGTTTC ACTGA
|
|---|
| Protein sequence | MKRLCRLAAV GVIAVTLIVG CRPCSAQLVV FDPNNYAQNV LTAARTLQQV NNQIVSLQNQ
AQMLINQAKN LATLPFSSLL QLEQSILRTQ QLLAQAQRIA YDIQQIDRAF STTYASASSS
VSDQALIANA QSRWQNAMAG LQDALRTQAT VVGNLDTNRT EMSALVTSSQ GATGALQAAQ
AGNQLLALQA QQLADLTAVI AAHSRAQNLE SAQHAAAQDQ GREQLRRFLT HGAGYQPTTV
QMFH
|
|---|
| |