| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1424 |
|---|
| Symbol | |
|---|
| ID | 5150529 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 1510442 |
|---|
| End bp | 1511518 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640556401 |
|---|
| Product | RND family mulitdrug efflux protein |
|---|
| Protein accession | YP_001237559 |
|---|
| Protein GI | 148252974 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.451308 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.17832 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATGC AGGTCACGAT GATCGCCGGC GCGGTGGCGT CGACATTGCT GCTCGCCGGC
TGTCAGCAGG AGACGAAGGC GCCGGAGCCT GTGCGTCCCG TCCTGTCGAT GCGGCTCGAG
CCAGATCGGG GAGATCGCGC GGTGGCCGTT GGCGTTATCG AGCCTCGCTA CAAGACCGAT
ATCGGTTTCC GCGTGCTAGG ACGGTTGACG TCGCGCCCCG TCTATGTCGG CGACCTTGTC
AGCGAAGGAC AGATTGTCGG GGCGATCGAT CCGACGGCTC TTGACCTCGC CGTCCGTTCA
GCACGAGCGC AGCTTGCAAA AGCCCAGGCC CAGCTTGCCA CTGCCCAAGC GACGGAGAAT
CGGCAGCGCA CGCTCATCAA CAGCGATGCG ACAACGAAGC AGACGCTGGA CAACGCCGAG
CAGGCGCGTG CCGGCGCGGA AGGCACGGTT GCGCAGGAAC AGGCAAACCT CACGAAGGCG
ATCGAGCAGC TCGGCTATGC CCAGATCAAG GCGGACTTCG GCGGAGTGGT CATCGCAGTC
GGCGCGGAGG TCGGCCAGGT GGTCTCGCCC GGTCAAAGCG TGGTCACGGT CGCGAGGCCT
GAGATTCGCG AGGCCGTCGT CGATATTGGA GAGGATTTTC CTGTGCCGCT CGAAGTCGGC
TTGCCTTTCA CCGTCGGCCT GCAACTCCTT CCGGATGTCC AAATCGGGGG CAGAATACGC
GAGGTCGCAC CGCAAGCCGA TCCCGTGACG CGCCTGCGAC GAATTCGAAT CGCGCTCGAC
AATCCGCCTG AGAGCTTCCG CCTGGGCGCG ACCGTCACGG CAAAGCTCGG CAAGGACCAG
AGCCCGGTGC TGCGTCTGCC CGCATCTGCG GTGCTTGCCA AGGATGGCGC GAGCTTCGTT
TGGCTGGTCG ATCAGCCCGC CGAAACTGTG TCGCTGCACA AGATCGATGT CATTCCCGAC
CAGAGCGGAT TCCGCGTCAC CGCCGGAATC GCTCCCGGCG CACGCGTCGT GACCGCCGGA
GTTCACAGCC TCAAGGCAGG ACAGCAAATC CGTATCGCAC AGGATCAAGA GCCATGA
|
|---|
| Protein sequence | MKMQVTMIAG AVASTLLLAG CQQETKAPEP VRPVLSMRLE PDRGDRAVAV GVIEPRYKTD
IGFRVLGRLT SRPVYVGDLV SEGQIVGAID PTALDLAVRS ARAQLAKAQA QLATAQATEN
RQRTLINSDA TTKQTLDNAE QARAGAEGTV AQEQANLTKA IEQLGYAQIK ADFGGVVIAV
GAEVGQVVSP GQSVVTVARP EIREAVVDIG EDFPVPLEVG LPFTVGLQLL PDVQIGGRIR
EVAPQADPVT RLRRIRIALD NPPESFRLGA TVTAKLGKDQ SPVLRLPASA VLAKDGASFV
WLVDQPAETV SLHKIDVIPD QSGFRVTAGI APGARVVTAG VHSLKAGQQI RIAQDQEP
|
|---|
| |