| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0560 |
|---|
| Symbol | |
|---|
| ID | 5151048 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 561583 |
|---|
| End bp | 563700 |
|---|
| Gene Length | 2118 bp |
|---|
| Protein Length | 705 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640555571 |
|---|
| Product | putative AsmA-like protein |
|---|
| Protein accession | YP_001236744 |
|---|
| Protein GI | 148252159 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.748944 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAT TGAAGATCGC AGGCGGGTTG GTTGGCGCCG TCGCCGTCGT GCTCGTCCTG
GCGCTTGCCT TTGGCCTTCC GGCGAGTGTT GTGACGGCGG CGATCCAGGA CCGCGTCGAG
CGTGACACCG GATATCGTTT GAGCATCGCC GGCTCCGCGA GCATCAGCCT GTGGCCATCG
CTGCATGCGA CGCTGACCGA CATCACGCTG CTCGATCCGA AGGACCGAGA CGGCAACAAC
CGGCTGACCG TCGCCAAGCT GCAGGCAGAT ATGGCGCTGT CTGGCCTCTG GTCGGGCCGG
CCCGACATTG CCGAGGTCAT CGTCGACAAG CCTACGCTGT ATTTGCCGCT GCTGCGTGAA
CGCCTGCGCG ACAATGCGCC GCGCAACCGC GCTCCGGCAA AGTCGGACGC CGCGCCGTCC
ATCCGGATCG AGCGGGTCAC GATCAGAGAC GGGGCTGTCA TCCTGTCCAA TCCGCGCGAC
CGCGTGGAGA ATCGCATCGA CGGCATTGGC GCGACGGCAT CGCTGGGCGG GGACGGCAGG
ATCAAGCTCA CCGGTACGGC CCGGGCGAGC GACCGTCCCG TCAGCTTCGA GGTCAATTCG
ACGGCCCCGG GGATGCCGAT TGATCGGCAG ACCCTGCCGG TCGAGTTCAA GCTCGAGATG
GCCGATGCCT TCCGCGGTGT TCTGGCCGGC CGCGCCGACC TGCGCCTCAA TGGACCGTTG
GTGATGATCA ACGGGCTCAG CGGCACCCTC GGCGGCGGTG ATTTCAACGG CTGGGCCTCG
GTCGATGTCG CCAGCAAGCC ACTCGTCAAA CTTGATCTGG ATGTGCGGCG GCTCGACCTC
GGCAGTCCTG CCGCGCCACG CAACGCCGGC GCTTCGGGAT GGAGCACGGC GGCCATCGAC
CTGCGCGGCC TCAACTACGT CGATGCCCGC GTGAAGCTGT CGGCGACCGA CGTCGGAGTC
GCCGGTGCTC GCCTCGGCCC GCTGGAGGTC GAATCGTCGC TGGCCGGCGG CGTGCTGAAG
GCGACCGTCG CCAATCTCGG TGCCTATGAC GGACAGGCCA GCGGTGAGGT CGTGATCGAT
GCCTCCACCG GCAATCCGGC CTACGCCATG CATTGCGACG TGGTCGGCAT CCGAGCATTG
CCGTTGCTGC AGAACCTCGC CGGTTTCGAC AGGCTCGACG CACGCCTGCA GGGCAAGTTG
GCGCTGCGGT CGAGCGGCGC CAGCCAGCAG GCCATCATGA GCAATCTGAG CGGCTCGGCG
TTCCTGCTGT TCCAGGATGG CGCCATCCGC GGCATCAATG TCGCGCAGAT GATCCGTTCC
TTGACCTCCA ACCCGCTGTC CGGCTGGCAG GATTCGAAGG AACTCACGAC CGATCTCACG
CAATTGTCGG CCTCCTTTCA GGTCGAGCGT GGTCAGGCCG CGACCGGCGA TCTCAATCTG
ATCGGACCGC TGGTGAAGGT CACTGGCGCA GGCACCATCG ATCTCGGCAA TCGCGTGCTG
GCCATGCGCG TCGAGCCGAA GCTGGTGATG ACCACCGAGG GGCAGGGCCG CAACTCGGAT
CCGATCGGGC TCGGCATTCC CGTGGTGATC GACGGCCCTT GGAGCCAGCC GCGCTTCTAC
CCCGACATGG CCGGCATCCT GGACAATCCC GACGCTGCCT ACGCCAAGCT CAAGCAGATG
GGTCAGGGCC TGTTCGGCAA GGACAATGCG GGACTCAACA ACCTGATCAA CGGCCTCGGC
GGCTTGATCG GCAACTCTGC CCCGACCGGT ACGGCTGGCG CGAATGGCGG GCCTTCGGCA
GCGGCGCCGA GCGGGCAGGC GCCGACGACA GGGCAATCCG ATGTGCTGGG CGGGCAGCTC
GGCGCGGCGA TCGGCAATCT GATTCAGCAG GGTCTGCAGC AAGGCGCGCC GCCGCAGGGC
CGCAGCCGAG GCCGTACCCT GAACCCGTCG GAAAGCGCCG CACCGCTGCT GCAGTCTCCC
CGGGCCGCGC AACCCCCGGC GACGGACGCT GGCCAGGACG CTGCCTCGGC GTCGGGCAAC
CCGCCGGATG CCGCGATGGA CGGCGCGCCG GACAGTCAGC CAATGAACGA TGTCTTGAAG
CGCATCTTCA ACAGGTAA
|
|---|
| Protein sequence | MKALKIAGGL VGAVAVVLVL ALAFGLPASV VTAAIQDRVE RDTGYRLSIA GSASISLWPS
LHATLTDITL LDPKDRDGNN RLTVAKLQAD MALSGLWSGR PDIAEVIVDK PTLYLPLLRE
RLRDNAPRNR APAKSDAAPS IRIERVTIRD GAVILSNPRD RVENRIDGIG ATASLGGDGR
IKLTGTARAS DRPVSFEVNS TAPGMPIDRQ TLPVEFKLEM ADAFRGVLAG RADLRLNGPL
VMINGLSGTL GGGDFNGWAS VDVASKPLVK LDLDVRRLDL GSPAAPRNAG ASGWSTAAID
LRGLNYVDAR VKLSATDVGV AGARLGPLEV ESSLAGGVLK ATVANLGAYD GQASGEVVID
ASTGNPAYAM HCDVVGIRAL PLLQNLAGFD RLDARLQGKL ALRSSGASQQ AIMSNLSGSA
FLLFQDGAIR GINVAQMIRS LTSNPLSGWQ DSKELTTDLT QLSASFQVER GQAATGDLNL
IGPLVKVTGA GTIDLGNRVL AMRVEPKLVM TTEGQGRNSD PIGLGIPVVI DGPWSQPRFY
PDMAGILDNP DAAYAKLKQM GQGLFGKDNA GLNNLINGLG GLIGNSAPTG TAGANGGPSA
AAPSGQAPTT GQSDVLGGQL GAAIGNLIQQ GLQQGAPPQG RSRGRTLNPS ESAAPLLQSP
RAAQPPATDA GQDAASASGN PPDAAMDGAP DSQPMNDVLK RIFNR
|
|---|
| |