Gene BBta_0554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_0554 
Symbol 
ID5156125 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp552110 
End bp553666 
Gene Length1557 bp 
Protein Length518 aa 
Translation table11 
GC content68% 
IMG OID640555565 
Productcaspase-like domain- and TPR repeat-containing peptidase 
Protein accessionYP_001236738 
Protein GI148252153 
COG category[R] General function prediction only 
COG ID[COG4249] Uncharacterized protein containing caspase domain
[COG4785] Lipoprotein NlpI, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.463703 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCTGGACC GCTGGACCGC CATCGTGATG ACTGCTCGCC TGCTGTTGCT GCTCGGTTTG 
ATGTTTGCCG TGGCGTTCTC TGGTCCCGCG CTGGCGGCCG GCGATCGCAT CGCGCTGGTG
ATCGGCAATG CGAAATACCC GGATGCCGAA GCGCCGTTGA AAGAGCCGAT CAACGATGCG
CGCGACCTCA CCGACGAGTT GAAGCGCGAC GGCTTTACGG TCGAAACGCT GGAGAACGCC
ACCGGCGAAG CGATGCGCCG CGGGCTCGAA CGGCTCTATG GCAGCATCAA GCCCGGCTCG
GTGGCGCTGG TGTTCTTCTC CGGCTTCGGC ATCCAGTCGA ATCGCACCAG CTACATGATT
CCGGTTGATG CGCAGATCTG GCAGGAGGCC GATGTCCGAC GCGACGGCAT CAGCCTTGAG
CAGGTGCTGC AGGAGATCAA CAGCCGCGGC GCCGGGGTCA AGATCGCGCT GCTCGATGCG
TCCCGCCGCA ATCCCTATGA GCGCCGCTTC CGCACCGCCT CGTCCGGACT GGCGCCGGTC
ATTGCGCCAA GTGGTACCCT GGTCATGTAC TCGGCGGCGC TGTCGGCGGT CGTGTCCGAT
ACGGGCCGCG ACCGCAGCCT GTTCGTGCAG GAGCTCTTGA AGGAAATCCG CGTTCCCGAT
CTGACCGCGG AGGAGACGCT GAACCGCACC CGGGTCGGCG TGACCCGCGC CTCGCGCAGC
GAGCAGGTGC CGTGGATCTC ATCCTCGCTC GCCGAAGACT TCTCCTTCGT GCCGGGCGCA
GGCGGCGTGC GGCCCACTCC GCCGGTCGAG AGCAGCACGG CGCCAGTCGC GGCTCCGACG
CCGACCCCCA CGCCGACCCA GGTCGTGGTG GCGCCGCCGC TCCCGCCGCC ACCTCCACCT
CCGCCCCCGC CGGTCCAGAA GGCGGATGCG CCGCCGGCGC CGCCCGTTGT TCCGCCGCCG
CCGGTTCCGA CCCCGTCGCC CGTCATCGCG ACCACCGCGC CGACGACCAC CGCGCCGGCC
ACCAACGTAA CGGCCGCGCC GCCGGTGCAG GATCCCTTCG CCGAGGACCC GACCATCAAG
AGCCTGACGG CCAAGATCGC TGCCAATCCG GAAGACGCCG GCGCGCTCTA CCGGCGCGGC
CAGGTCTATG CCAGCAAGGG CGCCTATGCG CAGGCCATCC GCGATTTCGA CGACACGATC
CGGCTCAATC CGAAGGATGT CGAGGCCCTC AATAATCGCT GCTGGGCGCG CACCGTGGTC
GGTGAGCTGC AGGCGGCGTT GCGCGACTGC AACGAGGCGC TCCGGCTGCG GCCGAATTTC
GTCGATGCGC TCGACAGCCG CGGGCTCGTC AACCTCAAGA GCGGCGCGAC CAAGAACGCG
ATCGCCGATT TCGACGCGGC GCTGAAGATC AACCCGCGGC TGACGTCATC ATTGTATGGG
CGAGGCCTAG CCAAGCAGCG CAACGGCGCG GCGCAGGAGG GCGCGCTCGA CATCGCCAAC
GCCAAGGCGA TCGATCCCAA TATCGTCCGC GAGTTCGAAA GCTACGGCGT GCGCTGA
 
Protein sequence
MLDRWTAIVM TARLLLLLGL MFAVAFSGPA LAAGDRIALV IGNAKYPDAE APLKEPINDA 
RDLTDELKRD GFTVETLENA TGEAMRRGLE RLYGSIKPGS VALVFFSGFG IQSNRTSYMI
PVDAQIWQEA DVRRDGISLE QVLQEINSRG AGVKIALLDA SRRNPYERRF RTASSGLAPV
IAPSGTLVMY SAALSAVVSD TGRDRSLFVQ ELLKEIRVPD LTAEETLNRT RVGVTRASRS
EQVPWISSSL AEDFSFVPGA GGVRPTPPVE SSTAPVAAPT PTPTPTQVVV APPLPPPPPP
PPPPVQKADA PPAPPVVPPP PVPTPSPVIA TTAPTTTAPA TNVTAAPPVQ DPFAEDPTIK
SLTAKIAANP EDAGALYRRG QVYASKGAYA QAIRDFDDTI RLNPKDVEAL NNRCWARTVV
GELQAALRDC NEALRLRPNF VDALDSRGLV NLKSGATKNA IADFDAALKI NPRLTSSLYG
RGLAKQRNGA AQEGALDIAN AKAIDPNIVR EFESYGVR