| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0499 |
|---|
| Symbol | |
|---|
| ID | 5156250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 493759 |
|---|
| End bp | 494661 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640555516 |
|---|
| Product | putative polysaccharide deacetylase family protein |
|---|
| Protein accession | YP_001236689 |
|---|
| Protein GI | 148252104 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.262777 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCAC AGCCAGTCTT TCGTCGCGAT TTCGTCGGCT ATGGCGGCCG TCCACCGCAT
CCGCGCTGGC CCGGCGATGC CCGCGTCGCG GTGTCGGTGG TGGTGAATTT CGAGGAGGGC
TCGGAATTCT CCGTCGCCGA TGGCGATACG GCCAACGAGG CGATCTACGA GGTCGTGCAC
CGGCTCGAGG GTCCCGATCC CTGCATCGAC AGCCATTTCG AATATGGCAC GCGCGCGGCG
TGGTGGCGCA TCATGGACCT GTTCGACAGC TACGGCGTCA AGGTGACCGT CAGCGCCTGC
GGCCGTGCCG TGGAGCGCTC ACCGGACCTC GCGCGCGATG CGGTCGCACG CGGCCATGAG
ATCTCGGCCC ATGGCTGGCG CTGGCAGAGC CATGCCGGCA TGGCCGAACC CGAGGAACGA
CGCCTGATCG CGCGCACGGT GGACACCATC CAGCACGTCA CCGGCAAGCC GCCGCTGGGC
TGGCATACGC GCTCGGCAGC CTCGCCGAAC ACGCGCCGGC TGCTGGTCGA GCAGGGCGGC
TTCCTCTACG ACAGCGACGC CTATAATGAT GACCTGCCGT ACTACGTCGA TGTCGCCGGC
CGCCCGCATC TGGTGCTGCC CTACGCCTTC GACAGCAACG ACATGCAGTA CTTCAACGGC
TCGCGTTTCC GTGGCGGCGA CTTCGCCGAC TACGTCATCG ACGCCTTCGA CTGGCTGGCG
CGTGAGGGCG CGACGGCACC GAAGATGTTG TCGATCGGGC TGCATCTGCG CATGATCGGC
CGCCCCGGCC GCATCGGTGC GCTGGACCGC ATCCTGGCGC ACGTCACCGG TAGCGGCGCC
GCCTGGATCG CGCCCCGCGC CGACATCGCG CGGCACTGGC TCGCGACGGT GCCGCCGGTC
TGA
|
|---|
| Protein sequence | MSSQPVFRRD FVGYGGRPPH PRWPGDARVA VSVVVNFEEG SEFSVADGDT ANEAIYEVVH
RLEGPDPCID SHFEYGTRAA WWRIMDLFDS YGVKVTVSAC GRAVERSPDL ARDAVARGHE
ISAHGWRWQS HAGMAEPEER RLIARTVDTI QHVTGKPPLG WHTRSAASPN TRRLLVEQGG
FLYDSDAYND DLPYYVDVAG RPHLVLPYAF DSNDMQYFNG SRFRGGDFAD YVIDAFDWLA
REGATAPKML SIGLHLRMIG RPGRIGALDR ILAHVTGSGA AWIAPRADIA RHWLATVPPV
|
|---|
| |