| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0372 |
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| Symbol | dapF |
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| ID | 5154441 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 371086 |
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| End bp | 371955 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640555391 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001236565 |
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| Protein GI | 148251980 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.963682 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.800614 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCGCGC TGGCCAACCA CAGCTTCGTC AAAATGAACG GGATCGGCAA CGAGATCGTC
GTGCTTGATC TGCGTGACGT GAAGCATGTG GTCACGCCCG ACGAGGCGCG GGCGGTTGCA
GCCCGCGTTC CCTACGACCA GTTGATGGTG CTGCAGCCGC CCCGGCTCGA CGGCACCGAG
GCGTTCATCC GCATCTACAA CAATGACGGG TCGGAGTCCG GCGCCTGCGG CAACGGCATG
CGCTGCGTTG TCCGGCAGGT GTTCGAGAAG ACCGGCCAGG CCAGCGCGAC CTTCGAGACC
CGTGCCGGAC TCTTGAACTG CTGGCAGGGG CCCGCGCCCG ACCTCTACAC CGTCGACATG
GGTGTGCCGA AATTCGGCTG GCAGGAGATT CCCCTGGCCG AGGAGTTCCG CGACACCCGC
TATATCGAGC TGCAGATCGG GCCGATCGAT GCGCCCATCC TGCACTCGCC CTCGGTCGTC
AACATGGGCA ATCCGCACGC GGTGTTCTGG GTGGACGGCG ACGTCAACTC CTATGACCTG
GAGCGGTTCG GACCGCTGCT GGAGAACCAC CCGATCTTCC CGGAGCGCGC CAACATCACG
CTCGCCCACA TCGTCGATCG CGATCACATC ACGATGCGCA CCTGGGAGCG CGGCGCGGGG
CTGACGAAGG CCTGCGGCTC GGCGGCCTGC GCCACGGCGG TCGCGGCCGC CCGGCTGAAG
CGGGCCAATC GCATCGTCCA GATGACCTTG CCCGGTGGCG AGCTGACAAT CGAATGGCGC
GAGCGCGACG ATCACGTGCT GATGACGGGC ACCGCGACCT TCGAGTTCGA GGGCCGGTTC
GAGCCACAGC TGTTCGCCAG CGTGGCATGA
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| Protein sequence | MSALANHSFV KMNGIGNEIV VLDLRDVKHV VTPDEARAVA ARVPYDQLMV LQPPRLDGTE
AFIRIYNNDG SESGACGNGM RCVVRQVFEK TGQASATFET RAGLLNCWQG PAPDLYTVDM
GVPKFGWQEI PLAEEFRDTR YIELQIGPID APILHSPSVV NMGNPHAVFW VDGDVNSYDL
ERFGPLLENH PIFPERANIT LAHIVDRDHI TMRTWERGAG LTKACGSAAC ATAVAAARLK
RANRIVQMTL PGGELTIEWR ERDDHVLMTG TATFEFEGRF EPQLFASVA
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