| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_0173 |
|---|
| Symbol | |
|---|
| ID | 5150377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 179851 |
|---|
| End bp | 181548 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640555198 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001236376 |
|---|
| Protein GI | 148251791 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGCA TCCGCTTCAA TCGCAATAGA GTGAAGCTGA ACCGGCTGTT GGGGATTCGG
GCACGGCTGG CGCTGCTGGC CGTGATCCTG GTTGCGCCGT TGATGCTGGA ACGCGCGCGG
TCGCTCGAAA CCGCCCGCAC GCGACAGATT GCGCTCGCTT CCGAAGAGTT CTTCAATATC
GCCCGACAAA GCGCCGACAT GCAGCGCGAG GTCATCATGT CGGTCGAAAC GGTGCTGAAA
TCCACCGCCT ATGTCCGCGC GTCGGCGTCC GGCGTCAGCC GCAGCTGCGA TATGCTGCGC
GCCAGCCTGC CGACAACGCT GCCCTGGATC CGCACCCTGA TGATCGCCGG ACGGGACGGA
CGCATCCAAT GCTCCACCAA TAATCAATAT GTCGGTCTCG ACTTCAGCGA GCGGCCTTAT
TTCCGCGGTG CGCAGGAGAC CCGCGACTTC GTGTTCAGCG ACTATCTGCT GTCGAAACCG
ACGCACATGC CGATCGTCAT GGCCGCCTAT CCGGTCGCAG CGATCACCGG GGAGCCCGAC
GCCGTCATGC TGGCGAGTGT CAATCTGGAA TGGATGTCCA AGATCATGAG CAATCTTGGC
AGCCGTCCGG GAATCACGGC GGTGCTGATC GACAGCGAGG GAACCGTGCT GGCCGCGCCG
ACCGATCGCA CCGAGCTGAT CGGACGGCCG CTCGACAGCG TGCCCCTGCT GTCGGCGGTG
GCCGAGACCG CGATGAGTTC CGACAAGCCT TCGGACACCG TCTCGTTCAC GGCCGCCGAC
GGATCAAAAC GCGCGATCAA TTTCACGCGC ATCGCCGACA CCGGCTCGCG CCTGATCGTC
AGCATCGATG AAACCCGCGT TACGGCCGCG ATCGACCGGG ACATCCGCAA CGCCTATCTG
CAGGCCGGGC TGGTTTGCCT GATCGTGCTG CTCGGCGCGC TGATTGCGGC GGAGAAGCTG
ATCGTCAAGC CCGTCAACAT GCTCGCGGCG ACCGCGAAGC GCTTCGGGCT CGGCCAATGG
TCGGCGCGTG TCGCCACCAA GAACCTGCCC TCGGAATTCG TGCCGCTGGC GAAGTCGTTC
AATGCCATGG CCGCCAAACT CGGCCAGCGT GAGCGCGAGC TCATTGCCGC CAATGACCGG
CTCACCGTGA TGGCTTCGAT CGACATGCTG TCCGGACTGG CCAACCGGCG CGGCTTCCAG
AACCATATCG ACGTCGAATG GGCGCGCGCC CTGCAGACCG GCGCCGAGCT CTCGCTGCTG
ATGATCGATG TCGATCACTT CAAGCTCTAC AACGACACCT ATGGCCATCC GGAAGGCGAT
GCCTGCCTGT CCCGGCTTGG CGAGACCTTG GCGCAGATCG CGCAAGCCAC CGACGCCTTT
GCCGGACGTT ATGGCGGCGA GGAGTTCTGT CTCTTGATTC CCGGCATCGA TGCGCGGCAG
GCTTTCGAGA TCGGCGAGCA GATCCGTTAT GCGGTGCTCG AGCTGAACCT GCCGCATGCG
ACTTCGGCGT ATCGCTGCGT CACCGTCAGC GTGGGCGTGG CCTCTGCGCG GCCCAACGAC
GCGCTCGCGA CGACCGACCT GATCGAAGCC GCCGACGCCG CGCTCTATGC CGCAAAGCAC
CACGGCCGCA ACACCGTCAT TGCGCATGGG CTGGTGGACT CTGCTCGCGA AGCAACTGGC
GTGGCGCGCG CGGGATGA
|
|---|
| Protein sequence | MPSIRFNRNR VKLNRLLGIR ARLALLAVIL VAPLMLERAR SLETARTRQI ALASEEFFNI
ARQSADMQRE VIMSVETVLK STAYVRASAS GVSRSCDMLR ASLPTTLPWI RTLMIAGRDG
RIQCSTNNQY VGLDFSERPY FRGAQETRDF VFSDYLLSKP THMPIVMAAY PVAAITGEPD
AVMLASVNLE WMSKIMSNLG SRPGITAVLI DSEGTVLAAP TDRTELIGRP LDSVPLLSAV
AETAMSSDKP SDTVSFTAAD GSKRAINFTR IADTGSRLIV SIDETRVTAA IDRDIRNAYL
QAGLVCLIVL LGALIAAEKL IVKPVNMLAA TAKRFGLGQW SARVATKNLP SEFVPLAKSF
NAMAAKLGQR ERELIAANDR LTVMASIDML SGLANRRGFQ NHIDVEWARA LQTGAELSLL
MIDVDHFKLY NDTYGHPEGD ACLSRLGETL AQIAQATDAF AGRYGGEEFC LLIPGIDARQ
AFEIGEQIRY AVLELNLPHA TSAYRCVTVS VGVASARPND ALATTDLIEA ADAALYAAKH
HGRNTVIAHG LVDSAREATG VARAG
|
|---|
| |