Gene Acry_2015 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAcry_2015 
Symbol 
ID5161315 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidiphilium cryptum JF-5 
KingdomBacteria 
Replicon accessionNC_009484 
Strand
Start bp2211195 
End bp2212667 
Gene Length1473 bp 
Protein Length490 aa 
Translation table11 
GC content63% 
IMG OID640553938 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_001235134 
Protein GI148261007 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.427751 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAATAG GACCTCGTCT CGATCTGCGA CATACTCAGT CGCTGGTGAT GACGCCTCAG 
CTGCGGCAGG CGATCCAGTT GCTGCAGTTC ACGAATGCCG AGGTCAGCCA GTTCATCGAG
GATGAACTTC TCAAGAACCC GCTGCTCGAA CGGGTGGAGC CCGAAGCCGA CGCGGCGCTG
CCCGTGCCGA GGAACGACGC TGCTTCCACC GAGAAGCCGA CGGGCGATAT TGGCGCGGAA
CATGTGGTCG ATCCGGATCC CTCCGGCGCG AGCACGCCGC TCGATGTCGA TTTTTCGAAT
GTCTATGACG CTGGCGGCGT GGGTGATGGA ACCGGTTCCG GCCTTTCGCC GGAGCGGGAT
GACTGGATCG GCCAGATTGC CGACCGGCCG CCGGGGTTGC GGGAAAGCCT CGATCAGCAG
GCGAGGCTCG CCTTTGCCGA CCCGGTGCGC CGCAGGATTG CGTTCGCACT CATCATGGCG
CTCGACCCTG CCGGACGCCT GGCCGACCCG CCCGAGCAGA TCGCCGAACG TCTTGCAGTC
GCCCCCGACA TGCTGGAGGC GGTGCGTCAG ACGATGATGC GTTTCGACCC GACCGGCATG
TTTGCCCGCG ATCTGGCCGA ATGTCTCGCG GTTCAGCTCG ACGAGCGCAA TAGGCTGGAC
CCTGCCATGC GCGCGCTGCT TGCCAATCTC GAACTTCTTG CCAGGCGCGA TCTTCGGTCA
CTGATGGAGA TCTGCGGCGT CGATGCCGAA GATCTGCGCG ACATGATTGC CGAAATCCGC
CGCCTCAACC CCAAGCCGGG GGCGATCTTC GATGTCACCC CCATGACGCC GTTGATCCCT
GATGTCCTGA TGCGCCCGGG GCCGGATGGC GACTATTTTC TCGAACTGAA CCCCGAGACC
ATGCCCCGCG TGCTCATCCG CCGAGGGTTC CACGCCCAAA TCGTCGCTCG TGCGTCCCGC
GAGACGCGGC AATTTCTTTC CGAACGCGTA CAAAGCGCGA ACTGGCTGGT ACGTGCCCTC
GAGTCCCGCG CGGAGACGAT CCTGCGCGTC GCCGGCGAGA TTGTGCGACA CCAGGACGCC
TTCTTTCGCC ATGGGATCGG GTTTCTCCGG CCATTGACCC TGCGCGAAAT TGCCGCCGCT
CTCGAGATAC ATGAAAGTAC GGTTAGCCGT GTCACGTCGA ACAAGGTGAT CGCCACACCG
CGCGGCATTT TCGAGATGAA ATTTTTCTTC ACGACCGCGC TTGCGGGCGC GAATGGCGAA
AGCCACAGCG CCGAGGCGGT GCGCCATCGC ATCTCGACGC TGATCGAGGG TGAGGCGGCG
AACCGAATCC TCTCCGACGA TGCGCTTGCC AGATTGTTAC AAAAGGAAGG CATAGACATA
GCCCGCCGAA CTGTGGCCAA ATACAGGGAA GCGTTGCGCA TTCCCGGCTC GGCGCAACGC
AAGCGCGAAA AAGGGCTTCT GGCAGGAGGC TGA
 
Protein sequence
MAIGPRLDLR HTQSLVMTPQ LRQAIQLLQF TNAEVSQFIE DELLKNPLLE RVEPEADAAL 
PVPRNDAAST EKPTGDIGAE HVVDPDPSGA STPLDVDFSN VYDAGGVGDG TGSGLSPERD
DWIGQIADRP PGLRESLDQQ ARLAFADPVR RRIAFALIMA LDPAGRLADP PEQIAERLAV
APDMLEAVRQ TMMRFDPTGM FARDLAECLA VQLDERNRLD PAMRALLANL ELLARRDLRS
LMEICGVDAE DLRDMIAEIR RLNPKPGAIF DVTPMTPLIP DVLMRPGPDG DYFLELNPET
MPRVLIRRGF HAQIVARASR ETRQFLSERV QSANWLVRAL ESRAETILRV AGEIVRHQDA
FFRHGIGFLR PLTLREIAAA LEIHESTVSR VTSNKVIATP RGIFEMKFFF TTALAGANGE
SHSAEAVRHR ISTLIEGEAA NRILSDDALA RLLQKEGIDI ARRTVAKYRE ALRIPGSAQR
KREKGLLAGG