| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_4254 |
|---|
| Symbol | |
|---|
| ID | 5165921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter uraniireducens Rf4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009483 |
|---|
| Strand | - |
|---|
| Start bp | 4916581 |
|---|
| End bp | 4917804 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640551732 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_001232970 |
|---|
| Protein GI | 148266264 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.157553 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTGGT TTGCCACCAT GAAATTGAGC GCCAAGTTCA ACCTGATCAT GTCCAGCCTG
TTAATCGTCT TGTTTCTTGC CGCCGCGTTC TTTACCTATA AGCGCGAGCA GTTGCTAATT
ATGAAGGTGG CGGTCGATAA CGCGCGTCAC ATTGCCAAGC AGATAATTGA AACCCGGGAC
TACATCTCCA GCGTGGTGCG GGGCGAGCCG GAAGGGAATT ATGCCCTTGT CCCGCAGGTG
GTGGCTACAC AGGTAGCAAA AAGAATGACC ACCGGCAGTA AATATTACGT GCGCCAGGTT
TCATTGCGCT ATCGCAATCC TGAAAACCGC CCCGATGATT ACGAAACGGA ACAGTTAAAG
AAATTTGCCG GTAAAGCCAT CAGAGAGTCG TATTCGGTAG TCGAGGTTAA GGGCGAGCAG
TCTTTTCGTT ATATGCAGTC AATGGTGGCG GAAAAATCAT GCCTTGAGTG CCACGGAACC
TACGATCAGG CCCCCTTGTT CATACGCAAC CGTTTCCCGC GCGGCCATTA TTCTTACAAC
TATAAACTAG GTGAGGTCAT CGGGGCCGTT TCGGTGACCA TTCCAATGGC CGAGCTGTAT
CGTGAAATAG GTACAAACCT GAAGGTTGAC CTGATATACC GCGGAGGTAT ATTTTTTGTC
ATTATTGTGA TAATGGGGGC CTTGATTAGG CGGAACATCA TCAATCCGAT CAAGATGCTG
TCGGAGAGCA TCACCCAGGT AACGAGAACC GGCAGCTTTG CCGATCGACT GCCGAAGAAG
TCGGATGACG AAATCGGCCA GCTCATTAAT TCATTTAACG AAATGATGGC GGAGCTGGAG
CGCAAAATAG AGCAAAGCAG GGAATCCGAA GAACGTTACC GTAAATTCAT TGAGATTGCC
AAGTCTGCGG TTGTCACCTT CATGCATGAC GGGAAAATTG TCATTGCGAA TCAGAAGGCC
GAGGAACTAT TCGGTCTTCC CCGCCAGGAA CTGTTGGGGG AAATCGTCTA TAATTTCTTC
GAGAACAGCG AAATGCTGAG GGAAGAAGTT TCCGATTATC TGCGAACCGG CGAGGAGAGG
AAAGGCGCTG CTCGGACAAC CATGCAAAAG GTGCGTGATG TCAAAGGCGT TTCAAGGGAG
GTAGAAGTGG CCCTTTCAGC GACCCAGACG GAGCATAGGC CGATGATAAC GGCGATCTTG
AGGGAACTCA CCAGCAATAA ATGA
|
|---|
| Protein sequence | MSWFATMKLS AKFNLIMSSL LIVLFLAAAF FTYKREQLLI MKVAVDNARH IAKQIIETRD
YISSVVRGEP EGNYALVPQV VATQVAKRMT TGSKYYVRQV SLRYRNPENR PDDYETEQLK
KFAGKAIRES YSVVEVKGEQ SFRYMQSMVA EKSCLECHGT YDQAPLFIRN RFPRGHYSYN
YKLGEVIGAV SVTIPMAELY REIGTNLKVD LIYRGGIFFV IIVIMGALIR RNIINPIKML
SESITQVTRT GSFADRLPKK SDDEIGQLIN SFNEMMAELE RKIEQSRESE ERYRKFIEIA
KSAVVTFMHD GKIVIANQKA EELFGLPRQE LLGEIVYNFF ENSEMLREEV SDYLRTGEER
KGAARTTMQK VRDVKGVSRE VEVALSATQT EHRPMITAIL RELTSNK
|
|---|
| |