Gene BBta_p0258 details

Gene Information

• Locus tag: BBta_p0258
• Symbol: avhB1
• ID: 5148655
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bradyrhizobium sp. BTAi1
• Kingdom: Bacteria
• Replicon accession: NC_009475
• Strand: -
• Start bp: 190071
• End bp: 190640
• Gene Length: 570 bp
• Protein Length: 189 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 640539135
• Product: Type IV secretory pathway AvhB1 protein
• Protein accession: YP_001220568
• Protein GI: 148241067

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGATCCAG CTGCATTCTT GGCTCTGGTC GAACAGTGCG CGCCGACGCC GAACCTCGTT 
CGGCCTCTGG CGGCAATTGT GCGGCAAGCG AGCTCGTTCG AGCCGCTGCT CATCACAATT 
CAGGGGCGGA AACCGATTCC GATTCAAGCA AATGACCGTG ACGAAGCTAT CCAGCTCACG 
ACCGAGGCCA TCGCCACCGG CCAGACGGTC CGGACCGGTC TCGCTCAACT TGATGCCGAG 
GAAACCAAGC AGGCCGGGTT GACGGCTACC ACGACCTTCG ACGCCTGCAA GCATATTGCG 
GGCCTTGGCA GATTGTTCGA GGCCCGATTG CAAGCCAAAA ACGTGAACGC CTCGGGCCGC 
GATCAGGCTA TTGCCAGGGT TGTCGCGAGC TTCGCAGCCA AAGCTCCCCG AACAACTCCC 
GAGCCCCGTA CCCTGCCGGC CGATGCTGCC GACACTTCCA ACGCTGACAT GCCGACAAGC 
AACACGCCAG CTCCCTCCGT CAGGGAGCGT CCGAACTGGG ACGTCTATCG CTCGGGCCTT 
GGCACGTCGG CCTTTGTCTA TGAACGATGA 

 

Protein sequence

MDPAAFLALV EQCAPTPNLV RPLAAIVRQA SSFEPLLITI QGRKPIPIQA NDRDEAIQLT 
TEAIATGQTV RTGLAQLDAE ETKQAGLTAT TTFDACKHIA GLGRLFEARL QAKNVNASGR 
DQAIARVVAS FAAKAPRTTP EPRTLPADAA DTSNADMPTS NTPAPSVRER PNWDVYRSGL 
GTSAFVYER