| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_p0078 |
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| Symbol | |
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| ID | 5148595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009475 |
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| Strand | + |
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| Start bp | 58668 |
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| End bp | 59897 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640539004 |
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| Product | putative secretion protein HlyD |
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| Protein accession | YP_001220437 |
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| Protein GI | 148240936 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.36335 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGCAA AGTGGACCAA ACGGATCATC GGTGCAGCGG CCCTGGCCGC GATCGCGGGG
GGACTGGCCT GGTTCGCCTG GCCACGGCCG GTCCTGGCGG ATCTCGCGAC CATCGCGAAA
GGCCCGATCG AAGTCACGGC CGACGATGAC GGCAAGACGC GCGTCCGCCA CGTCTACACG
GTTTCGGCGC CGATCGCCGG CAAGGTGCTG AGGATCTCTC ATCCGCTCGG CGAGCAGGGT
CCTTCTCTTC ACGTGGGCGA CGAGGTTGCC GCCAACCAGA CCGTCGCCCT GATGCAGCCG
ACGCTCCCGG GCTTCATCGA CGTGCGCTCC CGCGACCAGC TTGAGGCCGA AGTATTGGCT
GCGGACGCCG CCATCCAGCA GCAGCAGGCC GAGGTGCAGC GGATCGAGGC CGCGCTGGAC
TTCTCGCGGA CCGAATTCCA GCGGGCGCAG ACGCTCTTGC GTACGCAGTC CACCTCGGCT
CAGGCGTTCG ACAAGGCGAA ATTCGACGTG GCCAACAACG AAGCCGCCCT GGCGAGCGCG
AAGGCCCAGG TCGACATGCG TCGCGCGGTG CGTACCAGCC TGGCGGCTCG CTTGATGGAC
CCGGCCAACG CCGCGCCGTC GGCGGAGCCG GCCTGCTGCG TCCGGGTGCT CGCGCCGGCG
AGCGGACGTG TCCTGAAGAT CATCCAGGAC AGCGAGGCGA CGGTTCTGCC CGGGACGCCG
CTGGTCGACA TCGGCAACCC TCTCGATCTG GAGATCGTCG CCGACCTGCT CTCGACCGAT
GCGGTCCAGA TCAAGGTGGG AGCGCCCGTC CGGATCGACG GCTGGGGCGG ACAGCCCATC
AGGGGGAAGG TGGTGCGCGT TGACCCCGCC GGCTTCCTGA AGGTCTCGGC GCTGGGGATC
GAGGAGCAGC GGGTCCGCGT GACGATCGAT TTCGCGGATC CCCCCGACAC CTGGAGCTCG
CTTGGACACG ACTACCGGGT CGTCGTCCAT GTAACTACGT GGAGCGCTCC GGAGGCCCGG
ACCGTGCCAG TGAGCGCTTT GTTCCGGAAG GGCAACCAGT GGGCCGTTTT TGCTGACGAG
AACGGGCGTG CTCAAATGGT GACGGTCAGC ATCGGCCATC GAAATAACGG GATGGCCGAG
GTTCTCTCGG GGCTTGCTGC AGGGGATAGA GTCGTACTGC ATCCTAGCGA CCGGATCGGC
GATGGAACGA GAGTAGCCCA ACGCGACTGA
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| Protein sequence | MPAKWTKRII GAAALAAIAG GLAWFAWPRP VLADLATIAK GPIEVTADDD GKTRVRHVYT
VSAPIAGKVL RISHPLGEQG PSLHVGDEVA ANQTVALMQP TLPGFIDVRS RDQLEAEVLA
ADAAIQQQQA EVQRIEAALD FSRTEFQRAQ TLLRTQSTSA QAFDKAKFDV ANNEAALASA
KAQVDMRRAV RTSLAARLMD PANAAPSAEP ACCVRVLAPA SGRVLKIIQD SEATVLPGTP
LVDIGNPLDL EIVADLLSTD AVQIKVGAPV RIDGWGGQPI RGKVVRVDPA GFLKVSALGI
EEQRVRVTID FADPPDTWSS LGHDYRVVVH VTTWSAPEAR TVPVSALFRK GNQWAVFADE
NGRAQMVTVS IGHRNNGMAE VLSGLAAGDR VVLHPSDRIG DGTRVAQRD
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