Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2730 |
Symbol | rpoB |
ID | 5137372 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 2882357 |
End bp | 2886484 |
Gene Length | 4128 bp |
Protein Length | 1375 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640534176 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001218596 |
Protein GI | 147674155 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.15817 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTCAC ACTACAGTAA ACAGCGATTA GTCACTGTCC TCACCCTTTT TAACCTGAAA GGTGGACAGT TTGGGTCACT TATCAGCGAG CTGAGGAACC CCATGGTTTA CTCTTATACC GAGAAAAAGC GCATCCGTAA GGACTTTGGT ACTCGTCCAC AAGTGTTGGA CATTCCATAC CTGCTATCGA TCCAGCTCGA TTCGTTCGAA AAGTTCATCG AACAGGATCC TGAAGGACAA TACGGTCTTG AAGCCGCTTT TCGTTCTGTA TTTCCAATTC AGAGCTATAA CGGCAATTCA GAGCTGCAAT ACGTTAGCTA CCGTCTTGGT GAGCCAGTTT TTGACGTTAA AGAATGTCAA ATCCGTGGTG TAACTTATTC AAAACCGCTA CGCGTGAAAT TACGCTTAGT GATCTTTGAT AAAGACGCGC CAGCAGGTAC TGTCAAAGAT ATTAAAGAAC AAGAAGTCTA CATGGGCGAA ATTCCGCTCA TGACAGAAAA TGGTACCTTC GTAATCAATG GTACTGAGAG GGTTATCGTA TCCCAGCTGC ACCGAAGCCC AGGCGTGTTC TTCGACAGCG ATAAGGGTAA GACCCACTCT TCAGGTAAAG TTCTGTATAA CGCACGTATC ATTCCGTACC GTGGTTCATG GCTCGATTTT GAGTTCGATC CAAAAGACAA CCTGTACGTA CGTATTGACC GTCGTCGTAA GCTGCCTGCA TCGATCATCC TGCGTGTACT AGGTAAAACT AGCGCCGAGA TCCTGGACAT CTTCTTCGAA AAAGTGAATT TCGAAGTGAA AGATCAAACT CTAATGATGG AGTTGGTTCC AGAGCGTCTG CGTGGTGAAA CTGCGACCTT CGATATCGAA GCGGATGGCA AGGTTTACGT AGAGAAAGGC CGTCGTGTGA CTGCACGTCA CATCCGTCAA CTTGAAAAAG ATGGCGTGAA CTTTATTGAA GTTCCGGTTG AGTACATCGT AGGTAAAGTA TCTGCGAAAG ATTACGTGAA TGAAGCGACT GGCGAACTGA TCATTACCGC GAACCAGGAA ATCAGCCTGG AAGCGCTAGC GAACCTGTCT CAAGCCGGTT ACAAAAAGCT AGAAGTTCTA TTTACCAATG ATCTGGACCA CGGTCCGTTC ATGTCAGAAA CCCTGCGTGT TGATAGCACG ACAGATCGCA TCTCTGCACT GGTAGAAATC TACCGCATGA TGCGCCCTGG CGAGCCACCA ACGAAAGAAG CCGCGGAATC GCTGTTTGAA AGTCTATTCT TCTCTGCAGA GCGTTACGAT CTGTCGACTG TTGGCCGTAT GAAGTTCAAC AGCTCAATCG GTCGTGAAGA TGCGGAAGAG CAAGGCACGC TGGACGAAGT TGACATCATC GAAGTGATGA AAAAGCTGAT CTCGATTCGT AACGGTAAAG GCGAAGTGGA CGATATCGAC CACCTTGGCA ACCGTCGTAT CCGTAGTGTC GGCGAAATGG CAGAGAACCA ATTCCGTGTT GGTCTGGTAC GTGTTGAACG CGCAGTGAAA GAACGCCTAA GCTTGGGCGA TCTGGACAAC GTGATGCCAC AAGACCTGAT CAACGCGAAA CCAATTTCTG CTGCTGTAAA AGAATTCTTT GGTTCTTCTC AGCTGTCTCA GTTTATGGAT CAGAACAACC CGTTGTCAGA AGTGACGCAT AAGCGTCGTA TTTCTGCATT GGGCCCTGGC GGTCTGACTC GTGAGCGTGC TGGCTTCGAA GTACGTGACG TACACGTAAC GCACTACGGT CGTCTATGTC CTATCGAAAC ACCTGAAGGT CCAAACATCG GTTTGATCAA CTCGCTGTCT GCGTTTGCAC GCTGCAACGA GTACGGTTTC CTAGAAACCC CTTACCGTCG CGTAGTCAAC GGTGTTGTGA CTGACGAAGT GGATTACCTC TCTGCGATTG AAGAAGGTCA ATTCGTTATC GCTCAGGCGA ACGCTAAGCT GACAGAAGAA GGCGGTTTTG CTGATGAACT GGTTACCGCA CGTCAAAAAG GCGAGTCAGG TCTTCACCCA CGTGAACACG TTGACTACAT GGACGTTGCG ACAAACCAAG TTGTATCGAT CGCGGCATCC TTGATCCCGT TCCTAGAACA CGACGATGCG AACCGTGCTT TGATGGGTGC GAACATGCAA CGTCAGGCGG TTCCAACTCT GCGTTCAGAG AAACCACTGG TTGGTACGGG TATCGAGCGT AACGTCGCGG TTGACTCTGG TGTAACAGCG GTGGCGAAAC GTGGCGGTGT TATCCAGTCA GTTGACGCTT CTCGTATCGT AGTCAAAGTG AACGAAGAAG AGTTGATCCC TGGCGAAGCG GGTATCGACA TCTACAACCT GACTAAGTAC ACCCGTTCGA ACCAGAATAC TTGTATCAAC CAGCGTCCAT GTGTGATGCC GGGTGAACCT GTAGCTCGTG GCGATGTACT GGCAGACGGT CCTTCCACTG ACCTTGGCGA ACTGGCTCTT GGCCAAAACA TGCGTATCGC ATTCATGCCT TGGAACGGTT ACAACTTCGA AGACTCGATC TTAGTGTCTG AGCGCGTAGT TCAAGATGAC CGCTTTACCA CTATCCACAT CCAAGAGCTT TCTTGTGTGG CGCGTGATAC TAAGCTGGGC GCAGAAGAGA TCACGGCTGA CATCCCTAAC GTGGGTGAAG CGGCTCTGTC TAAGCTTGAC GAATCTGGCA TCGTGTACAT CGGTGCAGAA GTGAAAGGCG GCGACATTCT GGTTGGTAAA GTGACACCAA AAGGTGAAAC TCAACTGACT CCAGAAGAGA AACTGCTGCG TGCGATCTTC GGTGAGAAAG CCTCAGACGT GAAAGATACG TCTCTGCGTG TACCGAACTC AGTAGCAGGT ACGGTTATCG ACGTACAAGT CTTTACTCGC GATGGCGTAG AGAAAGACAA GCGTGCGCTT GAAATCGAAC AGATGCAGCT GAAAGAAGCG AAGAAAGACC TGACTGAAGA GTTCCAAATT CTGGAAGGCG GTCTTCTGGC GCGTGTTCGT TCTGTACTGC TGGCGGGTGG TTACACTGAA GCGAAACTGA GTTCAATCGA ACGTAAGAAA TGGTTAGAGC AGACGCTTGA AAATGAAGAG CTGCAAAACC AGCTAGAGCA ACTGGCAGAA CAGTACGATG AACTGAAAGC AGACTTCGAT AAGAAGTTTG AAGCGAAGCG TCGTAAGATC ACCCAAGGTG ATGATCTGGC TCCTGGCGTA CTGAAGATTG TTAAGGTTTA CCTAGCAGTG AAACGTCGCA TCCAGCCGGG TGATAAGATG GCGGGTCGTC ACGGTAACAA GGGTGTTATT TCTAAGATCA ACCCTGTTGA AGACATGCCA TACGATGAAA ACGGTCAGCC GGTTGACATC GTACTGAACC CACTGGGCGT ACCATCACGT ATGAACATCG GTCAGATCCT AGAAGTTCAC TTGGGTCTGG CGGCGAAAGG TATCGGTGAC AAGATCAACC AAATGATCAA GGAACAACAA GAGCTGGCGA AGCTGCGTGA GTTCCTGCAG AAGGTTTATG ATCTAGGCGA TACTCGCCAA CGTGTTGATA TCTCAGAACT CAGTGATGAA GATGTTCGTA CACTGGCGCA TAACCTGCGT GCTGGTCTAC CGGTCGCAAC GCCAGTCTTC GATGGTGCTC CTGAATCGTC TATCAAAGCT ATGTTGGAAC TGGCGGATCT GCCAGCTTCA GGTCAGTTGA CTCTGTTCGA TGGCCGCACG GGTGACGCAT TTGAGCGTCC TGTTACCGTG GGTTACATGT ACATGCTGAA ACTGAACCAC TTGGTTGACG ACAAGATGCA CGCTCGTTCT ACAGGCTCTT ACAGTCTGGT TACTCAGCAA CCTCTGGGTG GTAAAGCTCA GTTCGGTGGT CAGCGCTTCG GTGAGATGGA AGTGTGGGCA CTGGAAGCAT ACGGTGCTGC GTATACCCTG CAAGAGATGT TGACCGTTAA ATCGGACGAC GTGAACGGCC GTACTAAGAT GTATAAGAAC ATCGTAGATG GCAATCACGC GATGGAACCT GGTATGCCAG AATCGTTCAA CGTACTGTTG AAAGAGATTC GCTCGCTGGG TATCAACATC GAGCTAGAAG ACGAATAA
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Protein sequence | MNSHYSKQRL VTVLTLFNLK GGQFGSLISE LRNPMVYSYT EKKRIRKDFG TRPQVLDIPY LLSIQLDSFE KFIEQDPEGQ YGLEAAFRSV FPIQSYNGNS ELQYVSYRLG EPVFDVKECQ IRGVTYSKPL RVKLRLVIFD KDAPAGTVKD IKEQEVYMGE IPLMTENGTF VINGTERVIV SQLHRSPGVF FDSDKGKTHS SGKVLYNARI IPYRGSWLDF EFDPKDNLYV RIDRRRKLPA SIILRVLGKT SAEILDIFFE KVNFEVKDQT LMMELVPERL RGETATFDIE ADGKVYVEKG RRVTARHIRQ LEKDGVNFIE VPVEYIVGKV SAKDYVNEAT GELIITANQE ISLEALANLS QAGYKKLEVL FTNDLDHGPF MSETLRVDST TDRISALVEI YRMMRPGEPP TKEAAESLFE SLFFSAERYD LSTVGRMKFN SSIGREDAEE QGTLDEVDII EVMKKLISIR NGKGEVDDID HLGNRRIRSV GEMAENQFRV GLVRVERAVK ERLSLGDLDN VMPQDLINAK PISAAVKEFF GSSQLSQFMD QNNPLSEVTH KRRISALGPG GLTRERAGFE VRDVHVTHYG RLCPIETPEG PNIGLINSLS AFARCNEYGF LETPYRRVVN GVVTDEVDYL SAIEEGQFVI AQANAKLTEE GGFADELVTA RQKGESGLHP REHVDYMDVA TNQVVSIAAS LIPFLEHDDA NRALMGANMQ RQAVPTLRSE KPLVGTGIER NVAVDSGVTA VAKRGGVIQS VDASRIVVKV NEEELIPGEA GIDIYNLTKY TRSNQNTCIN QRPCVMPGEP VARGDVLADG PSTDLGELAL GQNMRIAFMP WNGYNFEDSI LVSERVVQDD RFTTIHIQEL SCVARDTKLG AEEITADIPN VGEAALSKLD ESGIVYIGAE VKGGDILVGK VTPKGETQLT PEEKLLRAIF GEKASDVKDT SLRVPNSVAG TVIDVQVFTR DGVEKDKRAL EIEQMQLKEA KKDLTEEFQI LEGGLLARVR SVLLAGGYTE AKLSSIERKK WLEQTLENEE LQNQLEQLAE QYDELKADFD KKFEAKRRKI TQGDDLAPGV LKIVKVYLAV KRRIQPGDKM AGRHGNKGVI SKINPVEDMP YDENGQPVDI VLNPLGVPSR MNIGQILEVH LGLAAKGIGD KINQMIKEQQ ELAKLREFLQ KVYDLGDTRQ RVDISELSDE DVRTLAHNLR AGLPVATPVF DGAPESSIKA MLELADLPAS GQLTLFDGRT GDAFERPVTV GYMYMLKLNH LVDDKMHARS TGSYSLVTQQ PLGGKAQFGG QRFGEMEVWA LEAYGAAYTL QEMLTVKSDD VNGRTKMYKN IVDGNHAMEP GMPESFNVLL KEIRSLGINI ELEDE
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