| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2211 |
|---|
| Symbol | |
|---|
| ID | 5137857 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 2358452 |
|---|
| End bp | 2359468 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640533667 |
|---|
| Product | putative fimbrial assembly protein PilM |
|---|
| Protein accession | YP_001218127 |
|---|
| Protein GI | 147673687 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
|---|
| TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.0494423 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAAAT CATTAGTTAC GGGTATTGAT ATCGGCCACC ACAGCATTAA AGCTGCGGTG
CTCAAACCTA TGGGCGACAC TTATGCGCTT GTGGGGTATG AGGAGTTGCT CGTTACCGCT
GATATTTTCA CCGATAATCA CACGCTCGAT TATCAGAAAA TTGTAAAGAA ACTAAAAGAA
CTAAAAAAGG GTTTGCCTCT ATTTAGTCAT AAAGTCGCGA TAGCAATCCC GGATAGCGCC
GTGATTAGCA AAGTATTACA AATAGATAGC GATCTTGAGC AGCGCGAGCT GGAATTTGCT
GTCTATCAAG CCTTTTCGCA TCAATCTCCA TTCCCCGTTG AAGAGCTGAG CCTCGATTTC
GTCAAAGTGA CGGAAAAAAG CCTCGCCCGC AGCAGCACGA CGACCTTCCA AGTGTATGCC
ACCAAAAAAG ACGTGGTCGA CAGTCGTTTG CATGCCGTTA AAAAAGCGGG TTTTGAACCA
GTGTTGATGG ATGTGCAAGT ACATAGTTTG TTGCATTTAT GGCAACTCGC TAGCCGTGCG
TATCGACGTC CAGACTGGAT GTTGGTGGAT ATTGGCTACA CCCAAAGTTC ATTGTGCCTC
GATTTTCCGG AAAAAATGCC CTTTTACAAA GACGTGCCAT TAGGAACTCG TCAATTGGAA
TCAGAACCCA GTGCTGTGAA CTCATTGAAT CATCCACTGT TACACGATCC CACGCAGCGG
TTTATTCAAG AATTGGTCGA CAAAATTGCG CGGCAAATCC AGCTTTTTAC TTCGGTGCAC
GGGACTCAAA GTCTTGGCGG GTTATGGCTA TCGGGTGGCG GTGCCACGCT TTCTGGTTTA
GAGGACGCGC TTTATCAACG CTTGTCACTG CCTTGCGAAG TGCTCAATCC GTTTTCACTG
TTCAAAAACA ATGTGGCAAA ACGCAAACGC CCACTGGTTG ATGGCCAGCG TTTTAGTACC
GCCGCCGGTC TTGCATTGCG AGGCTTAGCT TGGTTGGAGA GTGAGCATGT TGCATAA
|
|---|
| Protein sequence | MGKSLVTGID IGHHSIKAAV LKPMGDTYAL VGYEELLVTA DIFTDNHTLD YQKIVKKLKE
LKKGLPLFSH KVAIAIPDSA VISKVLQIDS DLEQRELEFA VYQAFSHQSP FPVEELSLDF
VKVTEKSLAR SSTTTFQVYA TKKDVVDSRL HAVKKAGFEP VLMDVQVHSL LHLWQLASRA
YRRPDWMLVD IGYTQSSLCL DFPEKMPFYK DVPLGTRQLE SEPSAVNSLN HPLLHDPTQR
FIQELVDKIA RQIQLFTSVH GTQSLGGLWL SGGGATLSGL EDALYQRLSL PCEVLNPFSL
FKNNVAKRKR PLVDGQRFST AAGLALRGLA WLESEHVA
|
|---|
| |