| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2198 |
|---|
| Symbol | |
|---|
| ID | 5136862 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 2344335 |
|---|
| End bp | 2346944 |
|---|
| Gene Length | 2610 bp |
|---|
| Protein Length | 869 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640533654 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001218114 |
|---|
| Protein GI | 147674583 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2374] Predicted extracellular nuclease |
|---|
| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 52 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATGA GAACAACCCC GAATTTAACG CGCTCAACGT TAGCTTTAGC GATTAGTTTT
GGCTTAGTGG CGCCAAGCTA CGCTGACCTA TTGATTTCTC AATACGTTGA AGGCAGTAGC
TTCAATAAAG CGATTGAAAT TGCCAACACG TCCGATCAAA CGGTGAGCCT GAATGGCTAC
CAACTGGCGA TGTCGACCAA CGGCAGCGGC ACTTGGGATA AAACTTTACC GCTCGATGGC
CAAGTGATTG CGGCGCGCGA TGTGCTGGTG ATTGCCCACG GTAGCGCCAA TAGTGCGATA
CTGGCGACCG CCGACCTAAC CAACAACACA GTGGTTAACT TTAATGGCAA TGATCCGATT
GCGCTGCTTA ATAGCGATGG TTCGGTGCAT GACGTGGTCG GCAGTATGGG CGGCGCAGAT
TTTGCGAAAG ACAACACGCT CGCCAGAACA ACACTCACCC CAAGCGCTAC TTACCAAGCT
TCCGATTGGG CGACCCAAGG CAAAGACAAT ATTGATGGGC TTGGCGCACT GGATACCACC
ACGCCACCGA GTGCATTCAA TTGTACGCTA GATGGTGCTG AACCAAGCTT TACCACCATC
CAACAAATTC AAGGTGAAGG CAGTACTTCT CCCTATATCC AAGGCTATCC CTACATCACC
AATGAGGATT TCTTTGTCAA AGGTGTGGTG AGTGCAGTAA CGACAGGACT GACTAAAGGC
TTCTATCTGC AATCGCTGGA AGATGACTAC AACCCGAATA CCTCAGAAGG CCTGTTCGTG
TTTACCAACC AAAGCAGTTC GGACTTAGCA CCGGGCGATG TGGTGTGCGT GAAAGGCAAA
GTGCAGGAGT ATTACAACCT GACGCAGCTC AAAGCGGAAA ACAATCAGTG GGTGAAACAA
GGCCAGCAAG CTGCGCCACA AGCGCAAGCC ATCGAGATCT TACCTTCCGA TGAACACTTT
GCTCAGACGC TAGAGCGTTA CGAAGGCATG CTAGTGAAAA CCACACCTGA GCTGGATATG
CGTGTGACTC GCACCTTTGG TTATGACTAT GCTTCGCGCC GTAACAACAT GGTGCTGGCA
CAAGGTCGCA TCAATATGCA GCCAAACCAG CAGCATCCTG CCGGTTCAGA GCAAGCTTCG
CAGCAGAAGC TGGATAACGC GCAGCGCCGC TTGTTTGTGG AATCCGATGC CAAAGCACCT
GATGGACAAA TTCCGTATTA CCCGACATTT GGCCGCACCG ATGTCGATCA AGATGGTTCA
ACCGAAGACT ATATCCGAAT TGATGATACG GTTTCAGGCC TCGAAGGGGT TGTGAGCTAC
AGCTATAACG AATATCGCCT GATTGCAACC AACACCATCT CGGCAGAAAA TCTGGTGCAT
AACGCACCGC GTCAAGTCAA GCCAGATCTG GATGAAGGCG ATCTGCGCAT TGCCACGTTC
AACGTACTCA ACTACTTCAA CTCGCCGTTT GGTGGTGATG CTAACCAACA TGGGGATAAC
CGTGGCGCCA ACAATCTGGC TGAATTTGAA GTGCAGCAAG CCAAGATTGT GAATGCGATT
GTTCGTTTGG ATGCCGATAT CGTGGGTTTG ATGGAAATTG AGAACAACGG CTTTGGTGAA
GGTTCGGCGA TTGCGCAATT GGTGAATCAG ATCAATAGCC AAATCGCGGA TAAGAAAAAA
CACTACCGCT TTGTGGAGAT TGACTCGAAT GGTGATGGCA AAACCGATGC TGCCGATTCA
CTGGGTACTG ATGTGATCAC CACAGGTGTT ATCTATCGCG ATAAAGTGGT GAAGCTGGCG
CAAAATCGTG TCATCCCAAT GCCAAGCCAG CAAGCACCAG AGGTGATAAA TGCCAACGGT
AAAGTGATTG AAGATGGCAA AAACTATCAG CGTGATACGC TTGCCCCAAC CTTTAAAGTC
AAAGGTGGCA ACGAGAAAAT CACTGTCGCG GTGAATCACT TCAAATCGAA AGGATCAGCG
TGTTGGGAAG ATGCCGCGCC CGTTGAGCAA GGCGGACAAG CAGGCAAAGA TCTCGATTAC
CAAGGCGCAT GTGAAAACTT CCGCGTCGCC GCCGCGGTAG CGTTGGGTGA TGCGCTGGCG
AAAATCGATG GGCACAAAGT GATTCTCGGT GATATGAACT CGTACGGCAT GGAAGATCCT
ATGCTGGTGC TGACGGACTA CACACCAGAG AAATACGGCA AAACCATTCG CGCCGCACGC
AATACCTACA TTGCCGGTGT GGAGCAGTTT GGAGATTCAG GCGCAGAGAT CAAACACAGC
TACGGTTATC TCAACGCAGT TGCAATGAAA CATCCAGACA GTTGGAGCTA CTCATTTAAT
GATGAAGTCG GCGCGTTGGA TCATCTGTTA GTCAGTCCAA GCCTGAAACA TAAAGTCGTG
GATGCGACCG ATTGGCACAT TAACGGTGCA GAATCGACCT TGTTTGACTA CAACGATGAG
TTCAAAGGCA ACCTGCCGAA ATACAAGGAT CAATTCCGCG CCTCAGATCA TGACCCAGCG
GTACTGGAGC TTAACATCTA CGGTGGTTCA TTAGGTTTAG GCGCACTGCT TGGCTTATTG
GGACTTGGTA TTTGGCGCCG CCGTCGCTAG
|
|---|
| Protein sequence | MEMRTTPNLT RSTLALAISF GLVAPSYADL LISQYVEGSS FNKAIEIANT SDQTVSLNGY
QLAMSTNGSG TWDKTLPLDG QVIAARDVLV IAHGSANSAI LATADLTNNT VVNFNGNDPI
ALLNSDGSVH DVVGSMGGAD FAKDNTLART TLTPSATYQA SDWATQGKDN IDGLGALDTT
TPPSAFNCTL DGAEPSFTTI QQIQGEGSTS PYIQGYPYIT NEDFFVKGVV SAVTTGLTKG
FYLQSLEDDY NPNTSEGLFV FTNQSSSDLA PGDVVCVKGK VQEYYNLTQL KAENNQWVKQ
GQQAAPQAQA IEILPSDEHF AQTLERYEGM LVKTTPELDM RVTRTFGYDY ASRRNNMVLA
QGRINMQPNQ QHPAGSEQAS QQKLDNAQRR LFVESDAKAP DGQIPYYPTF GRTDVDQDGS
TEDYIRIDDT VSGLEGVVSY SYNEYRLIAT NTISAENLVH NAPRQVKPDL DEGDLRIATF
NVLNYFNSPF GGDANQHGDN RGANNLAEFE VQQAKIVNAI VRLDADIVGL MEIENNGFGE
GSAIAQLVNQ INSQIADKKK HYRFVEIDSN GDGKTDAADS LGTDVITTGV IYRDKVVKLA
QNRVIPMPSQ QAPEVINANG KVIEDGKNYQ RDTLAPTFKV KGGNEKITVA VNHFKSKGSA
CWEDAAPVEQ GGQAGKDLDY QGACENFRVA AAVALGDALA KIDGHKVILG DMNSYGMEDP
MLVLTDYTPE KYGKTIRAAR NTYIAGVEQF GDSGAEIKHS YGYLNAVAMK HPDSWSYSFN
DEVGALDHLL VSPSLKHKVV DATDWHINGA ESTLFDYNDE FKGNLPKYKD QFRASDHDPA
VLELNIYGGS LGLGALLGLL GLGIWRRRR
|
|---|
| |