Gene VC0395_A2131 details

Gene Information

• Locus tag: VC0395_A2131
• ID: 5136915
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 2288511
• End bp: 2289227
• Gene Length: 717 bp
• Protein Length: 238 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640533587
• Product: ABC transporter, ATP-binding protein
• Protein accession: YP_001218047
• Protein GI: 147674984
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 53
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTGCTC ACCGTTCTGA TCCTACTTCA TCCGTGATTG AGTTGAATGA TGTGGTGTTC 
TGTTGGCCGG GAGCCAGCTC ACCCACCTTG GATATTGCCC ATTTACAGAT TGCTCGGGGT 
GAACACCTGT TTGTCAAAGG CCCCAGTGGC TGCGGCAAGT CCACGTTACT TAGCCTTTTA 
ACTGGCATTA ATACCGCAAC ACAAGGTGTC GTCTCTTTAC TTGGCAGTGA CTTAAGCCGC 
TTGAGTGCCA GTCAGCGCGA TCGCTTCCGC GCCGACCATA TAGGCTATAT TTTCCAACAA 
TTTAATCTGC TGCCTTATCT GTCGGTGTTA GATAACGTGA CCTTACCATG CCACTTTTCC 
GCTTTGCGTA AACAGCAAGT GGATGATCCC TTATCGCACA AAGCGCAATC GCTGTTGGAA 
AGATTGCATC TGCCAAGCGC TTTACTGAAT AAACCCGTGA CCGAACTCAG TATCGGCCAG 
CAGCAACGCG TCGCCGCGGC GCGAGCACTG ATGGGTGAAC CGCAACTCAT CATCGCCGAC 
GAACCCACGT CTGCCCTCGA TTACGATAAC CGTGAAGCTT TTATTGCTCT GCTGCGTGAA 
GAAGCGGAGC GAGTCGGTTC CACTTTAGTT TTTGTTAGCC ATGACCCAAC ACTGGAAAAG 
CTTTTTGAGC GAAGTGTTCA CTTACCTACT CTCAATCGTG CAGGAGGTTG GCAATGA 

 

Protein sequence

MPAHRSDPTS SVIELNDVVF CWPGASSPTL DIAHLQIARG EHLFVKGPSG CGKSTLLSLL 
TGINTATQGV VSLLGSDLSR LSASQRDRFR ADHIGYIFQQ FNLLPYLSVL DNVTLPCHFS 
ALRKQQVDDP LSHKAQSLLE RLHLPSALLN KPVTELSIGQ QQRVAAARAL MGEPQLIIAD 
EPTSALDYDN REAFIALLRE EAERVGSTLV FVSHDPTLEK LFERSVHLPT LNRAGGWQ