Gene VC0395_A1925 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1925 
Symbol 
ID5135460 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand+ 
Start bp2056118 
End bp2056741 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content47% 
IMG OID640533382 
Productputative smp protein 
Protein accessionYP_001217849 
Protein GI147675400 
COG category[R] General function prediction only 
COG ID[COG3726] Uncharacterized membrane protein affecting hemolysin expression 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATGGTT CACTTTTTTC ATTCCGAGTC GTTGTGCGCG TGGCAACGGT GCTCGCTGTC 
GCAGTCATGT TTTTTATCAC CATCCAAAAC AGCGTTGTGA TCAGTAAAGG CAATGAACGC 
ATTCAAGCCA ACCAGTTGGA AACCTTAACC AAAGTTCTGA TTACTCAAGC GGCGATGTCT 
GCGGGAAGTA TGATTGCCGA TCAAGATCAG GAACGTCTGT TAGCACTCAC TAACCAGCTT 
GCTACTGATC GTCTGGTATT CGATGCCTCG ATTTATGATT CTGAAGGCGT ATTGCTGGCC 
GCGAGTGACT CTGCGCTCAG TGTGCGTGAA GTGCTGGGTT TAGATACGCC ACTGCATACT 
GCCAGCATTG GCCGCCAACA ATTAGTTGAG CCCGTAGTTC ACGACGGCAG TTTAATTGGT 
TTCGTACGCA TTACTTTTGA AACCGGTAAA GTGACGGCGA TTTCAGACCA TCACTATCGT 
AAGAGCGACC ACAATATGTA TTGGATGCTG TTGATGAGTT TTGTCAGCGG TGTGCTACTG 
ACGCTGTTAC TACGACGCAG ACCGAAAAAA CCAACAGGTG AGAACTTACT GCTCAAGCAA 
GCCGAACAGT CTTTGAATGA GTAA
 
Protein sequence
MDGSLFSFRV VVRVATVLAV AVMFFITIQN SVVISKGNER IQANQLETLT KVLITQAAMS 
AGSMIADQDQ ERLLALTNQL ATDRLVFDAS IYDSEGVLLA ASDSALSVRE VLGLDTPLHT 
ASIGRQQLVE PVVHDGSLIG FVRITFETGK VTAISDHHYR KSDHNMYWML LMSFVSGVLL 
TLLLRRRPKK PTGENLLLKQ AEQSLNE