| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1874 |
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| Symbol | |
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| ID | 5135956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1993077 |
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| End bp | 1994594 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640533331 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001217798 |
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| Protein GI | 147675568 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3322] Predicted periplasmic ligand-binding sensor domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 47 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTAA ATAACTTTAG CCTACGCTGG CTAACGACAC TCAATGCGTT AGCGGTGGTG
TTAGGCTTTT TAATGTTTTA TCTGACCTTT AAATATTTCT GGTCACATGA TCGTGAAGTT
GCGCAAGTGC TGCAGTTACA ACAGGCCGAG TTGCAGCGGG TTGAAACCTT GTTGTCGTTA
GAACGTAAGG CGATGGGGGC TTCTTTGGCA GATTATGCCG CTTGGGATGA AATGGCAGAC
TTCATTGCAA AACCCACCCT TGAGTTCACA CAAAGCAATA TTGGAGAGCA CGCTTTCAGT
TCACAATTCC TCGATGGCGT ATTTATCTAT GATCCTGAGG GCAATTTGGT TTGGGGCAAG
AAATATGACG CAGCAACGGG GCAGAGCTCT AGCTATGAGC ACTTATTGCC GGATTTTTCA
CGTATTTTAC AGCAGGCGAC ACGTTTAAGT GTGGATGAAA TCTCGACTTC CGTTCGTTAT
ATGGTGGTGG AGGATGAGCC CTATTTAGCT GCCACGGCTC GTGTCTGTGA CAGTGATGGG
AAAGGGTGTA ACAAAGGTTT CTTAATCTTT ATTAAAAAAG TCCGCGCCCA GTTTGCGAAT
GTGGTTGAGC AAGCCACTGG TGTCGATATT GAAGTCTTAA CCTGTAAAAA TGATGCGCCC
TTACCGCAAG ACGAAGTGGA TGTTTCATAC ATCAAGCAAC TCGATTACAG CGGTAATTCC
AGTGTGTTGT TTAAAATTAA CCATCACATT AAGCATCCTC CCTTCATTCG AACCGAAGAA
ATTCTTGCTT TGCTGTTCTT TTCACTGGTG ATGTACTTAG TCAATTTATG GGTGGTGATT
GCCTTGATCA AACCGATCAC GACCGCCAGT CAAGTGTTGC AACAATTTAA AACATCGGGC
GGAAAAATGC CGGATGCGAG TACTTTTATC TCATCGGAGA TGAAAGAATT TGCCACTACG
ATCAACCGAA TCGTCGGACA ATTGGAGGAT AGTCAACAAG TGTTACGTTG GCAGTCTGAG
CATGATCCAC TAACCCGCAT TTCCAATCGT CGCCATTTAG AAAAGCAGCT TAAAAGTTAT
TTGAGCGATC GTCCGCAAGC CTATCTGGTG CTGTTTCTTG TCGATATCGA TTTTTTCAAA
CGTTTCAATG ACAGCTTTGG TCATTTGGCT GGCGATGAAG CCTTATGTTC CGTTGCTGAT
GTGCTCCAAT CGGTGGAGTT CCATGGCGAG AAAATCGTGG CGCGCTTTGG GGGAGAAGAG
TTTTGTGTTG TTTTAGCTTC GGACTGTGCA TTTGATGCAG AACAGTATGC ACAACAGATG
AGAAGCAAAA TCGAGCAGCT CGCGATTGCA AATCCGGTTG ATGCACTCTG CCAATATCTA
ACGGTGAGCA TTGGTGGTGT GTATGCTATT TCTCCAAAGA TGGAGTCTTA TCTCTCTTTG
TTCCATCAGG CGGATATGGC ACTTTATCAT GCGAAAGAAC ACGGACGAGA TCGATACGTT
GTGCGAAATT TTGTCTAA
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| Protein sequence | MNLNNFSLRW LTTLNALAVV LGFLMFYLTF KYFWSHDREV AQVLQLQQAE LQRVETLLSL
ERKAMGASLA DYAAWDEMAD FIAKPTLEFT QSNIGEHAFS SQFLDGVFIY DPEGNLVWGK
KYDAATGQSS SYEHLLPDFS RILQQATRLS VDEISTSVRY MVVEDEPYLA ATARVCDSDG
KGCNKGFLIF IKKVRAQFAN VVEQATGVDI EVLTCKNDAP LPQDEVDVSY IKQLDYSGNS
SVLFKINHHI KHPPFIRTEE ILALLFFSLV MYLVNLWVVI ALIKPITTAS QVLQQFKTSG
GKMPDASTFI SSEMKEFATT INRIVGQLED SQQVLRWQSE HDPLTRISNR RHLEKQLKSY
LSDRPQAYLV LFLVDIDFFK RFNDSFGHLA GDEALCSVAD VLQSVEFHGE KIVARFGGEE
FCVVLASDCA FDAEQYAQQM RSKIEQLAIA NPVDALCQYL TVSIGGVYAI SPKMESYLSL
FHQADMALYH AKEHGRDRYV VRNFV
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