Gene VC0395_A1799 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1799 
Symbol 
ID5135481 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand- 
Start bp1904689 
End bp1905357 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content48% 
IMG OID640533256 
Productputative lipoprotein 
Protein accessionYP_001217724 
Protein GI147674348 
COG category[S] Function unknown 
COG ID[COG5616] Predicted integral membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones59 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCGCCA TAGTATATCT GGAGATGAAG AGAATGAAAA AATGGCTTTC CTTAGTACCC 
GTCGTTTTAC TGACTTCGTG TGCATACGCC CCGATTTATA ACGGCAAAGA GCCATACAAT 
GGTTCACAGT TTATGTTGAT GGAGAGTCCT CGTCACACAT TGGATTTCTT TGTTGAGAGC 
ATGACGGAAG ATTTGATGCT CTCGAATACC AGCATTACTG CTCGTACGCC AATTGCGGTG 
ACCTCGTTTG TCGATCTGCA AAATATGGAT ACCACTAACT GGCTCGGTAA TTCGGTCTCG 
GAAGGATTCA TTCACCAGTT TCAGCGCCGT GGATTCAAAG TGGTGGATTT TAAAACCACA 
GGTTCAATCC AAGTGACGCA GCAGGGGGAT TTTGCCTTTA GCCGCGACTG GAAAAACCTT 
TCTTCAGAGC AAGAAGTCCA GTACGTACTG ACAGGGACTA TGCTGCGCCA AGAAGGCGGG 
GTGATAGTGA ATGCTCGTGT AGTTGGCATG CACTCACGAA TTGTTGTGGC CACGGCACAA 
GGTTTCTTGC CTGCCGATCG TATCGGCCGA GATTTGGATA CGCTCAACAG TATCCGTACC 
CAAGATGGAG TGTTGATCCG CTCAGATCCA ACCATCACTC AGCCGTACAC CGTGATTTTA 
CGTCCATAG
 
Protein sequence
MRAIVYLEMK RMKKWLSLVP VVLLTSCAYA PIYNGKEPYN GSQFMLMESP RHTLDFFVES 
MTEDLMLSNT SITARTPIAV TSFVDLQNMD TTNWLGNSVS EGFIHQFQRR GFKVVDFKTT 
GSIQVTQQGD FAFSRDWKNL SSEQEVQYVL TGTMLRQEGG VIVNARVVGM HSRIVVATAQ 
GFLPADRIGR DLDTLNSIRT QDGVLIRSDP TITQPYTVIL RP