| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1666 |
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| Symbol | |
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| ID | 5136974 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1790108 |
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| End bp | 1793473 |
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| Gene Length | 3366 bp |
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| Protein Length | 1121 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640533123 |
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| Product | AraC/XylS family transcriptional regulator |
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| Protein accession | YP_001217605 |
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| Protein GI | 147674890 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3292] Predicted periplasmic ligand-binding sensor domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCGCTGA CAGGGGAACT CGTGTTTCGC ACATTGTTGT ATGGCTGCTT GCTCAATATC
CTGATCCCAT CCTTGGTATT GGCATTAGAT AAATCTATGT CTATTTTCTA TCCTTTGCCC
ATTCAAGAGC AGGGGAAAGT TATTGTTGCG CAAAATCTCT ACCTCGGTAG TGATGGGGGG
ATTTGGGTAC ATGATGTTCA TGGCAAAGTG ATGTACTTTG ATGGACAAAA CGTCTTGCCT
CGTCGTGGTT CTGTTCTGCC GCAGTTGTCC AGTCATATTG TTTATGCGAA CAGTGCATTT
TGGGCTTTTG AGCAACACGA GTTGTTCAGA ACCTATCCCG GGGGAGAAAG AGAGCTGATG
TTGAGCTTAA CTCCGGGAAC GCAGATTATT CAGATGGGGG CCTCAAATGG CATGATCTGG
ATGGTTGATG GGGAAAACTT CTATAGTTAT GAGATCCGAA GTGGCCGCGT CGAATCCCTC
TCGTTACATG AACTTTATCA GCTCAATAGT GCCAGCAAGG TCGTGATTAA CGATGCGCAG
TTTTTAGTCT CGAAATGGGC TTTAGCGACT AATGTTGGGG TGTATTTATC TGATGAACAA
GGTTTTGCCC ATGTAAAAAA TTCTGGCAAG CACTTTATCC AAAAGCTCTA TTTTTCCCAT
AAGCGGCGAG AGCTGTTAGT TGGGTCTAAA CGTGGCGCGT TAGTCATTGA TATTGAAAAT
AAACGTCCAC CACTGGATAG AATTGGTTCC TCCCATGTCC TCTCTATTGC GGAAACCGAG
AAAGAGTACT GGATCGGTAC AGAAGATGGG CTCTTTGTTT ACTCTTTTAT CACCGGGAAA
ATCGTGCAAC TTGAGAGTAA CAACCAAGAT GGCTATGCCT TACTGGGCAA GAAAATCTAC
GCCATGGTGA ATGACTTTCA AGGTGGGATG TGGATAGGAA CTGACAAGGG GATTTTTTAT
TACTCCCTAT TTGGTCAGCA GTTTACTCGG TATCCGGCGC AAGCATTATC TAACGACGGA
AGTAAAACAC CGATCGGTAA AATAGCCGCT CTTAACTCGG ATGGAGACTA TCTGGCGATA
ACCGCACAAG GCCTGTATAA CTTTAATTTT TCAGATGAGC TACGTAAGCA TCTTATCTAT
CCAGGTAAAG TAAATGATTT TGTGATTGCC CAAGAGCATC TCTGGATCGC GACAGAGAAA
GGTCTGGTTC GTTACAATCT CAGTCGTCGT AGTATTGATA CGCCCAATTT ACCGCTCCCT
TTGCTACAAA CGGCTATTCA GCATCTGAGC TTAGATAGTG ACGGTAACTT ATGGGGGACA
AGTGATTACC AAATATGGTC ATACTCACTC TCTGAAAAAA ATTATCGAGA TTATGGTTCT
GAATGGATGG TGAAGGCTTT TTCTCCATCA AGGATCACTC TGCTTGCCGC AGTAAAAGAC
GGCATAGTGA TTGGGACGGA ACATGGCGCT TATTCCCTGC TTGAAAAACA GATCCGCTTT
GATTTTTCGA GTCATCGCTA TGGTGAGATT TTACAAGTTG CTGAAGATTC TTCAGGCCAC
ATTTGGCTTG TTGGCTCTTA TGGGGTTTTT CAGTGGCGTA AAGATCAGCC CGAAGCTGTC
ACTGTCGAGT TAATTGAAGA GAATATACAG CCTTTGTGTA TTGCTGAGTC TAAGCAGGGG
ATGTGGCTTA TCTCCACCAA AGGGATCAGT TATTACCGTA ATCAAGAGCT CACTAAGCAT
TTTGGGGCTC CTTATGGACT GATCAGTAAT GAGTTCTTGT CTGCATCGTG TGCGGTGGGT
GAGGAGCAAG ATAACTCATC GTTGATCATA GGATCGCAAT TTGGTGTAGT GAAAACCAAT
ACAGAAGAAT TAGCGGTGTC TAATTTGCCC AATATTCAGG TGACGTTTAG CCAAGTCAGC
GTAAATCATA CGACCAAGCT TTTGGGGTAT CGTATGTCCG AGCCACTGAA AATTGCTTAT
GGTGATTCGA TCAGCTTTCA GTTTGGCGCT TTACCCTCTT CACGCAGCCA ATCTTTAGAA
TACAAACTCA ACGATGAACA GCAGTGGCAG CGCTTTGATT GGGCGCTGCT CAATTTTGAT
CAACTTTTAC CTGGTAAGTA TCGTTTGAAA GTCCGTAGCG CTAATCCGAC ACAGCGATAC
CGAACTGAGG CCCTGTTTGA TTTTGAAGTC TTACAGCCTT GGTATATGAC CTCCATCGCG
CTTGTCGGAT ATGTGCTGAG CGTGTTGGGG TTATTAGCAC TCGCTTTATG GTGGCGAACA
AGAATGATAT TGGCAGCTAA CCGCAAACTC AAAGCGCAAG TGGAGCTCAA AACCAGTCAG
TTACGTCATC AAAGTAAAAT TGTGCTGAGC AACAACCACC AACTTCGAAA GCAACTGCAG
CTCCACCATA CAATTCTTGG TAACGTGTTA GACAATATTG ATGCTTCATT GCGGCACTTA
TCTTCCTACG CCAAAGTACG AGCATGGAGT GAATTTGAAG CACCGTTCAA CAAGGTGAAG
CAAGAGTTGG CTCAACTGCA TTTTATGCAT CGCGGCGATG AGGATGAAAG CAAATATCAT
GATTTGCATC TTTTGATTGA GTCTGCATTG AAGAGTTGGC AGGAAGAGTA CAGTAAAGCC
TTGATTAAGC TAACTTACAG CGGTGAGCCT CGCTTTGTGG AAGTCCGACA ATTCAACCTT
GATGTGTTAT TTAATGCTGT ATTAACGGAT GCGATCAAAC GTTTGTATAA GCATCAAGAA
TTAACCATAC AACTTGAAGT GAGAAATGCG CAGGCGGTTA TCGTATTTTC TGATTTTGGT
GCCCCAATCC AAAACATAGA CAAAACCATG GTGACGTTAT CTGGTAGTAG TTATCCGCTT
GAAGAGTTAG TCATTCGCAG TGGTGGTGTA TTGCATGTGC TCGCGTTGAA AGAGCGTAAT
GTGATTGAGT TAGCTTGGCC ATTGGCAACC TTACCCGAGT TAGAAACCAT TCATAAACCA
GAAGAAGGGG AACAGGCGGC TAAGGTTGGG ATCGATGAGG TGGAGAAGGA GTGGCTAAGC
AAAGTCGAGA AACTGATTGA GCTGCATTAT AGCGACCCCA ATTTCACCAC ATCCACTGCA
GCGCAGGCGC TTTATGTCTC TGAACGCAGT TTACAGCGTC GCTTTAAAGC CGCGACAGGA
AAAACCTTCA AAGAGTCGTT AAATGAGGTT CGCTTAGAAA AAGCGTGTCA AAGCTTATTG
AGTGGGGCGA AAATCGCACA AGTTGCCTTT GATTGCGGAT TTAATGATCC CTCTTATTTC
AGTCAGCGTT TCAAACATCA TTTTGGATTA TCACCAAGCC AATTCATCGA AGATCAAGAA
AACTAA
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| Protein sequence | MSLTGELVFR TLLYGCLLNI LIPSLVLALD KSMSIFYPLP IQEQGKVIVA QNLYLGSDGG
IWVHDVHGKV MYFDGQNVLP RRGSVLPQLS SHIVYANSAF WAFEQHELFR TYPGGERELM
LSLTPGTQII QMGASNGMIW MVDGENFYSY EIRSGRVESL SLHELYQLNS ASKVVINDAQ
FLVSKWALAT NVGVYLSDEQ GFAHVKNSGK HFIQKLYFSH KRRELLVGSK RGALVIDIEN
KRPPLDRIGS SHVLSIAETE KEYWIGTEDG LFVYSFITGK IVQLESNNQD GYALLGKKIY
AMVNDFQGGM WIGTDKGIFY YSLFGQQFTR YPAQALSNDG SKTPIGKIAA LNSDGDYLAI
TAQGLYNFNF SDELRKHLIY PGKVNDFVIA QEHLWIATEK GLVRYNLSRR SIDTPNLPLP
LLQTAIQHLS LDSDGNLWGT SDYQIWSYSL SEKNYRDYGS EWMVKAFSPS RITLLAAVKD
GIVIGTEHGA YSLLEKQIRF DFSSHRYGEI LQVAEDSSGH IWLVGSYGVF QWRKDQPEAV
TVELIEENIQ PLCIAESKQG MWLISTKGIS YYRNQELTKH FGAPYGLISN EFLSASCAVG
EEQDNSSLII GSQFGVVKTN TEELAVSNLP NIQVTFSQVS VNHTTKLLGY RMSEPLKIAY
GDSISFQFGA LPSSRSQSLE YKLNDEQQWQ RFDWALLNFD QLLPGKYRLK VRSANPTQRY
RTEALFDFEV LQPWYMTSIA LVGYVLSVLG LLALALWWRT RMILAANRKL KAQVELKTSQ
LRHQSKIVLS NNHQLRKQLQ LHHTILGNVL DNIDASLRHL SSYAKVRAWS EFEAPFNKVK
QELAQLHFMH RGDEDESKYH DLHLLIESAL KSWQEEYSKA LIKLTYSGEP RFVEVRQFNL
DVLFNAVLTD AIKRLYKHQE LTIQLEVRNA QAVIVFSDFG APIQNIDKTM VTLSGSSYPL
EELVIRSGGV LHVLALKERN VIELAWPLAT LPELETIHKP EEGEQAAKVG IDEVEKEWLS
KVEKLIELHY SDPNFTTSTA AQALYVSERS LQRRFKAATG KTFKESLNEV RLEKACQSLL
SGAKIAQVAF DCGFNDPSYF SQRFKHHFGL SPSQFIEDQE N
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