| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1629 |
|---|
| Symbol | |
|---|
| ID | 5135287 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1752729 |
|---|
| End bp | 1753649 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640533086 |
|---|
| Product | histone deacetylase/AcuC/AphA family protein |
|---|
| Protein accession | YP_001217568 |
|---|
| Protein GI | 147674598 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000000111374 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCCCAC TGATTTACCA TCCTATTTAT TCACAACTGG ATTTGCCTGT GGGGCATCGT
TATCCGATCA ATAAGTATCG CCTGCTTTAC GAAGAGATTG TGCGTCAAAG AGAGCAAAGT
GAAGCATGGC AAGCGAGCTT CGAGTTTCAT ACCCCCATTG CGGCCGAGCT TTCACGCATC
ACGCGATTGC ATGACCCAGA TTATGTGCAA GCTTTGCTCG AGGGGACGCT ATCCGCGGCC
AAGATGCGTC GAATCGGATT TCCTTGGAGC AAACCACTGA TTGAGCGTAC TTTGTACTCG
GTGGGAGGAA CCTGCCTCAC GGTTGAGCAA GCGTTGCAAT CAGGGGTGGC AATTCATCTC
AGTGGGGGTT ATCACCATGC TCACGCCGAT TTTGGTAGCG GTTTCTGTCT GTTCAATGAT
CTGGCGATAG CCGCGCACTT CGCACTCTCT TTGCCTAGTG TTGATAAAGT TCTGATCATT
GACAGTGATG TACATCATGG TGACGGCACG GCAACCTTGT GCGCGGAACG TGACGAGATC
ATTACGCTCT CTTTTCACTG TGATAAGAAT TTTCCGGCGC GTAAGCCTGC TTCTAGTATG
GATGTCGGAT ATGCTAACCA GACGGGCGAT GAAGAGTTTT TGTCCACTTT CATCCAAGCG
GTGGAAATGG CGGTCAATCT CCATCGACCT GATCTGATCC TCTATGACGC CGGTGTGGAT
ATTCATAACG ATGATGAGCT AGGTTATTTA TCCATTTCAC AGGCCGCTAT CGCGCAACGA
GATCGTTTTA TGTTGGGTTT GGCAAAGCAG GAGAGCATTC CAATCGCTTG TGTCATAGGC
GGTGGGTATC GCGAAGACCA TACGGCACTC GTGCCATTGC ATCTTGAGTT ACTGAAAGCG
GCGTTAAGCG CAGGGTATTG A
|
|---|
| Protein sequence | MIPLIYHPIY SQLDLPVGHR YPINKYRLLY EEIVRQREQS EAWQASFEFH TPIAAELSRI
TRLHDPDYVQ ALLEGTLSAA KMRRIGFPWS KPLIERTLYS VGGTCLTVEQ ALQSGVAIHL
SGGYHHAHAD FGSGFCLFND LAIAAHFALS LPSVDKVLII DSDVHHGDGT ATLCAERDEI
ITLSFHCDKN FPARKPASSM DVGYANQTGD EEFLSTFIQA VEMAVNLHRP DLILYDAGVD
IHNDDELGYL SISQAAIAQR DRFMLGLAKQ ESIPIACVIG GGYREDHTAL VPLHLELLKA
ALSAGY
|
|---|
| |