| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1542 |
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| Symbol | |
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| ID | 5137076 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1661624 |
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| End bp | 1662571 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640532999 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001217483 |
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| Protein GI | 147674306 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.00182355 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTTGCTG AACGCGCGAG CCAAATGGCT TTATTTGCGG TGTTAATCCA ACATCAAAGT
TTTACTGCTG CTGCGCACGC GCTAGGCGTG TCGGTGTCTC ATGTCAGTAA ACAGCTCGCC
GCGTTAGAGG CCTCGCTGGG CGTTAAACTG GTGCAGCGCA CCACGCGCAG CTTTACTCTG
ACGGATGCTG GGAATCTGTT TTATGCCCAG TGCCGTGAAC TTTTAACGAT TGTGACCAAT
GCACAAAGTG AAATGGAAGA TCAGCGTGAT GAAGTGGTAG GGCTGATTAG ACTTGGTTTA
TCGCAATCTT TTGGCACCTT GCATGTGTTG CCTGCTTTGG AGCAGCTTCG CCAACAATAT
CCTGAGTTGA ACGTCGAAGT GCATCTGTTT GATCATAAAG TCGATATGCT CAAGGAAGGG
TTGGATTTAT GGATCACCAG TAACGAGCAG CTACCAGAGG GTTATGTGGC GCAGCGCATT
GCCGATTGCC GTTTTGTGGT GGCCGCATCG CCAGACTACC TGCTGCGTTA TGGATCACCC
ACAGAACCTA TGGCCTTAAT GGAGCATAAC TGCTTGATTT ATCGAAGCTG GGAGCGCGAT
TACACCCGTT GGTCATTCAG CCGAGATGGA CACAATCAAA CCATTAAAGT GGCCGGAAAC
TACTCGGTCG ATCTGGCGGA GGCGGTACGC GATGCTGCCG TGGCAGGATG GGGAATCGCT
TATTTGGCGA CCTATTTGCT GCGAGATGAA TTTCGCACAG GGCAGCTTAT TCAGCTGCTG
CCGGAGTGGT CCGCCAATCA ACAGATGCCG TTTTATGCGG TGTATCCCAG TCGTCAACAT
ATGCCGAAAA AAACATCGGC GGTGATTGAA TTTATCAAAC AGCGGCTCGG TACGCCTTGT
TACTGGGATA CTCGTTTACA ACCTTATGTT CGTTTTGCAG CAGAATAG
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| Protein sequence | MFAERASQMA LFAVLIQHQS FTAAAHALGV SVSHVSKQLA ALEASLGVKL VQRTTRSFTL
TDAGNLFYAQ CRELLTIVTN AQSEMEDQRD EVVGLIRLGL SQSFGTLHVL PALEQLRQQY
PELNVEVHLF DHKVDMLKEG LDLWITSNEQ LPEGYVAQRI ADCRFVVAAS PDYLLRYGSP
TEPMALMEHN CLIYRSWERD YTRWSFSRDG HNQTIKVAGN YSVDLAEAVR DAAVAGWGIA
YLATYLLRDE FRTGQLIQLL PEWSANQQMP FYAVYPSRQH MPKKTSAVIE FIKQRLGTPC
YWDTRLQPYV RFAAE
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