| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1536 |
|---|
| Symbol | |
|---|
| ID | 5136714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1650277 |
|---|
| End bp | 1651206 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640532993 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001217477 |
|---|
| Protein GI | 147675040 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAG AACCCAAAGT TACTAATAAA GGAACAGTCA TGCTAAATGA GTTAAAACGC
ATAGTGATAT TCAATAAAGT GGTTGAGTGT GGTTCTTTTA CTTGTGCAGC AGAAGCATTA
GGTATGACCA AATCTAAGGT CAGTGAACAG ATCACCGCTT TAGAAAAAAC ACTGAATGTG
CGCTTGCTAA ACCGAACTAC CCGTAAAATC AGTTTAACCA CAGAGGGGGA CACATTTTAT
CAACGCAGCC ACGGATTATT GAATATTGCG GAGGAGGCGC TTTGCTCCGT TAACCACTTA
GCGTCAGAAG TTTCCGGAAC GATCCGCATT GGTACCACTA TTGATGTCGG CACTTTTTTG
CTCAACCCGC TACTGGCTGA GTTTTATAAG CAGTACCCTA AGGTGAATTT CGATATTCAG
CTCGATGATG GACTGCAAGA TTTGGTGGAT TCTAATCTGG ATATGGTGAT CCGAATTGGT
GAGCTGACGT CATCCTCTTT AGTTGGCCGT GTTATAGCGC CTTTTGAGTT AGGTATTTAT
GCCAGTCAAA CCTATTTAGA GAACGCGCCG CCGATCAATA CGATTCAGGA TTTAGAGCAG
CACGATTGGG TCTATCTCAC ACGCTTAAAT CTGCCTAACC AAACCCTAAC TTTAACCAAT
CAAGAGGGCG TACAACATCA GGTCAAATTC CATAGCAAAC ACAGCAGTAA TTCTCCGCTT
GGCGTCATGA CCATGGTGCA AAATGGTTTG GGTGTGGGAT CGATTGCCAG TTTTTTGATT
GATAAGTTGC CTGATGCATC GCTAGTGCGA TTGTTTCCGG ACTTCTATCA GATCAGTACT
ACCATGAATA TTCTCTACCC CAGTCGGAAA AATTTGCCGC CAAGGGTGCG TTTATTTATC
GATTATCTGG TGGGAACATT GTGTGGTTAA
|
|---|
| Protein sequence | MKIEPKVTNK GTVMLNELKR IVIFNKVVEC GSFTCAAEAL GMTKSKVSEQ ITALEKTLNV
RLLNRTTRKI SLTTEGDTFY QRSHGLLNIA EEALCSVNHL ASEVSGTIRI GTTIDVGTFL
LNPLLAEFYK QYPKVNFDIQ LDDGLQDLVD SNLDMVIRIG ELTSSSLVGR VIAPFELGIY
ASQTYLENAP PINTIQDLEQ HDWVYLTRLN LPNQTLTLTN QEGVQHQVKF HSKHSSNSPL
GVMTMVQNGL GVGSIASFLI DKLPDASLVR LFPDFYQIST TMNILYPSRK NLPPRVRLFI
DYLVGTLCG
|
|---|
| |