| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1485 |
|---|
| Symbol | |
|---|
| ID | 5136001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 1595193 |
|---|
| End bp | 1595582 |
|---|
| Gene Length | 390 bp |
|---|
| Protein Length | 129 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640532943 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | YP_001217428 |
|---|
| Protein GI | 147673225 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5633] Predicted periplasmic lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.111399 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAACGT GGCTATTAGC AGTATTAACC GCTTTACTCT TAGTGGGATG CAGTGCTAAC
ACTGCGGGTT TGCGAGTGGA TGGCGCATCA CAGCAAGTCT TATTTAACGA CAGCGCTTTA
AGCAAAAGCT TAAGTATTGA GGACATTTCA ACCACGGAAG TGGATGGACA TACTCGAGGC
GTGGTTCGTT TGCAGAGTAA CCAAAAAAGC GATGTGCATG TGCAGTACCG TTTTTATTGG
TATGACAATG ATGGGCTTGA AGTGAATACC AAGTTAAGCC CATGGAAAAC CATCATTTTG
CGAGGCATGG AAACCGTGTC ACTGACTGAG GTTTCGGTGA ACCCGAACGG TAAGCAGTTT
CGCGTCCAGA TCCGCGAAAG CGATCAATAA
|
|---|
| Protein sequence | MRTWLLAVLT ALLLVGCSAN TAGLRVDGAS QQVLFNDSAL SKSLSIEDIS TTEVDGHTRG
VVRLQSNQKS DVHVQYRFYW YDNDGLEVNT KLSPWKTIIL RGMETVSLTE VSVNPNGKQF
RVQIRESDQ
|
|---|
| |