| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1445 |
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| Symbol | ompT |
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| ID | 5137471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1545830 |
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| End bp | 1546936 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640532903 |
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| Product | ompT protein |
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| Protein accession | YP_001217388 |
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| Protein GI | 147675262 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000000000193384 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGGAAAACC ACCTTCAAAA AACAGGGAAC CGGACAAGGA ATTCCCATAT TAAGAAAAGG
CAGTGGATTA ACATGAAAAA AACTCTATTA GCACTCGCAG TGCTTGCAGC CGCAGGCTCT
GTAAACGCAG CTGAAATTCT AAAATCAGAT GCTGGCACAG TTGATTTTTA CGGTCAGCTA
CGTACAGAAT TGAAATTCTT AGAAGATAAA GATCCAACAA TTGGTTCTGG TTCTTCGCGC
GCTGGTGTTG ATGCAAACTA CACCGTTAAC GATAGCTTAG CGTTACAAGG TAAAGTGGAA
TTCGCACTAA AAGACAGTGG CGATATGTAT GTTCGTAACC ACATTCTTGG TGTAAAAACT
AATTTTGGTA AGTTTAGCTT TGGTAAACAA TGGACTACAT CTGACGATGT ATACGGTGCT
GACTACTCTT ATTTCTTTGG TGGTACAGGT CTTCGTTACG GCACACTGTC TGATGCACTA
CACGATTCTC AAGTCAAGTA TGTTTACGAA GCTGACAGCT TCTGGGTTAA AGCTGGTTAC
GGTTTTCCAG AAGATAATGC AAAGCAAGAG CTAGCAGAAC TGTATGTAGG TGCAACATTT
GGTGATTTGG CTGTGCACGC TGGTGGTGGT CAAAACCGTG ATAAAGCATT CAAAGTTGGT
AGTAATACGG TTGGCACAAC AACCACAGAT ATTAAAGCTG ACGTAACAAA TAGTTACTTT
GAAGTGACAG GTGAGTACAC TATTGGTGAT GCACTGATTG GTGTTACTTA CTACAACGCA
GAACTAGATG TAGAAAATAA CCCACTAGTG ATCGATGAAG ACGCTATTTC TGTTGCTGGT
ACATACAAAG TTGCTGACAA GACAAAATTG TATGCTGGCT ATGAGTATGT AATGCAAGAA
GCGAACACTG GCGCAGATGA AGATGGTACT CTTGTTTACC TAGGTGTTGA ATACAAATTT
GCAAGCTGGG CTCGTGTATA TGCTGAGTAT GGCTACGGCG ATGGTACAAC TCTGGGTTAC
ACCAACAAGG GTTCTGACGC AGAAGTTAAA GCAACGAAAG TCGACAGCGC TAATAACTTT
GGTATCGGTG CTCGTATCTA CTGGTAA
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| Protein sequence | MENHLQKTGN RTRNSHIKKR QWINMKKTLL ALAVLAAAGS VNAAEILKSD AGTVDFYGQL
RTELKFLEDK DPTIGSGSSR AGVDANYTVN DSLALQGKVE FALKDSGDMY VRNHILGVKT
NFGKFSFGKQ WTTSDDVYGA DYSYFFGGTG LRYGTLSDAL HDSQVKYVYE ADSFWVKAGY
GFPEDNAKQE LAELYVGATF GDLAVHAGGG QNRDKAFKVG SNTVGTTTTD IKADVTNSYF
EVTGEYTIGD ALIGVTYYNA ELDVENNPLV IDEDAISVAG TYKVADKTKL YAGYEYVMQE
ANTGADEDGT LVYLGVEYKF ASWARVYAEY GYGDGTTLGY TNKGSDAEVK ATKVDSANNF
GIGARIYW
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