| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1357 |
|---|
| Symbol | |
|---|
| ID | 5135845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1449205 |
|---|
| End bp | 1450440 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640532815 |
|---|
| Product | phage family integrase |
|---|
| Protein accession | YP_001217300 |
|---|
| Protein GI | 147675094 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.183355 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAATA ATCTAACCGC AAGGCAAATT CAAACCGCAA AACCTAAGGA TAAGCTTTAT
CGTTTATCTG ATGGCGGCAA TCTCTACTTT TGCGTACGTC CAAGCAATTC TCGCTCATGG
CAATTCCGTT ATAAACGACC AGGACAAGAT AAGATCACTT ATCTTTCGTT TGGAACCTAT
CCCGATATGT CTTTGGCGGA AGCTCGAGAG AAAGCCCTTG AGGCTCGCAA GCAGTTAGCG
GATGGTATTG ACCCTCAACT CGCTAAAGAA GAACAAAAAG CAAAAACCAT TACTGAACAA
AATGCGACGT TCAAGTTTGT CGCTGAGCAA TGGAAGGCTA CGAAGGAAGG ACAAATAAAA
GAGAAGACAC TGGAAGGGAA TTGGCGAAAA CTTGAACTTT ATGCCTTTCC CAAATTGGGC
TCGATACCCG TTAGTAAACT TACTGCGCCG ATGGCCATCG CTGCATTACG GCCAATAGAG
TCTCAAGGAT TACTAGAAAC TGTAAAACGC ACCGCCCAAC TTATGAATGA AATCATGAAC
TATGCGGTAA ATAGCGGTGT CATTCATGCT AACCCATTAG CTGGCATCCG TGATGTGTTT
AAAAAACACA AAGTGGTGCA CATGAAAGCC CTGCAACCAC ATGAAATGCA TGATCTTATA
CGCACCGTTG CTACAGCAAA TATCCAGCAT GTGACACGAT TTTTAATTGA ATGGCAACTT
CACACCATGG TTCGGCCTAA CGAAGCCTCT GGTGCTCGTT GGGAAGAAAT CGACATGGTT
AATAAGCTTT GGATTATCCC TAAAGAGCGA ATGAAGATGA ACCGCGAGCA CGTAGTCCCA
CTGACAGCAC AAACATTGGC TATTCTTGAA GCGATTAAGC CCATCAGTGG TCATAGAGAA
TTCATTTTCC CATCTAGCCG TAATCCAAAG GTACCCACCG ATTCTGAAAC CGCTAATAAA
GCACTTGGCA GAATGGGATT TAAGGATAGA ACGACCGCGC ACGGTCTTCG TGCTTTGGCA
AGTACCACTC TTAATGAACA GGGCTTTGAA CCTGATGTCA TTGAAGCCGC ATTGGCTCAT
ACTGACAAAA ACCAAATACG CAAAGCATAC AACCGTACCG ACTATTTAGA CTCTCGTCGA
AAGCTTATGA GCTGGTGGAG TGAGCATATC GAAAAATCTA GCTATGGAAG TTACAGTGTG
GCTGGTACTG GATATTTGCA CTTACTGAAA GCCTAA
|
|---|
| Protein sequence | MANNLTARQI QTAKPKDKLY RLSDGGNLYF CVRPSNSRSW QFRYKRPGQD KITYLSFGTY
PDMSLAEARE KALEARKQLA DGIDPQLAKE EQKAKTITEQ NATFKFVAEQ WKATKEGQIK
EKTLEGNWRK LELYAFPKLG SIPVSKLTAP MAIAALRPIE SQGLLETVKR TAQLMNEIMN
YAVNSGVIHA NPLAGIRDVF KKHKVVHMKA LQPHEMHDLI RTVATANIQH VTRFLIEWQL
HTMVRPNEAS GARWEEIDMV NKLWIIPKER MKMNREHVVP LTAQTLAILE AIKPISGHRE
FIFPSSRNPK VPTDSETANK ALGRMGFKDR TTAHGLRALA STTLNEQGFE PDVIEAALAH
TDKNQIRKAY NRTDYLDSRR KLMSWWSEHI EKSSYGSYSV AGTGYLHLLK A
|
|---|
| |