Gene VC0395_A1284 details

Gene Information

• Locus tag: VC0395_A1284
• Symbol: pspF
• ID: 5137748
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 1365125
• End bp: 1366141
• Gene Length: 1017 bp
• Protein Length: 338 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640532742
• Product: psp operon transcriptional activator
• Protein accession: YP_001217228
• Protein GI: 147674452
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
• TIGRFAM ID: [TIGR02974] psp operon transcriptional activator PspF

Plasmid Coverage information

• Num covering plasmid clones: 50
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAACAGA GCTTGCTCGG AGAGTCACCT GCGTTTTTAG CGGTGTTAGA CAAAGTCTCA 
CGTTTGGCGC CGATCGATCG TCCTGTGCTG ATCATTGGCG AGCGCGGAAC GGGTAAAGAG 
TTGATCGCCC AGCGCTTGCA CTATTTATCA AAACGTTGGG AACAACCGCT GGTGTCGCTA 
AACTGCTCAA CGCTCAGTGA AGGGCTGATC GATTCAGAGC TGTTTGGCCA TGAATCAGGC 
TCGTTTACTG GAGCCAAAGG ACGCCATCAA GGACGTTTTG AACGTGCCGA AGGCGGTACG 
CTGTTTTTAG ATGAATTGGC CACTGCACCA CTCTCAGTGC AAGAAAAACT GCTACGCGTG 
ATCGAATACG GCCAATATGA ACGTGTCGGT GGCAACCAAG TATTAAACGC GAATGTGCGC 
TTGGTATGTG CAACCAACGC GAATTTACCG CAAATGGCTC AGCAAGGCAC ATTTCGCGCA 
GACTTACTGG ACCGACTGGC GTTTGACGTG ATTCATTTGC CCGCACTTCG CCATCGACCA 
GAAGATATTG CGCTGCTTGC CGAACATTTT GCTATTCGCA TGTGCCGTGA ACTACAAGTG 
CCACTCTTTG TTGGCTTTAG CCCCAATGCA TTACACCAAC TGCAAGCCTA CTCTTGGCCG 
GGCAATGTGC GTGAGCTGAA AAACGTGGTG GAGCGCGCGG TGTATCAACA TGGGTTGAAT 
AGCCAACCAA TTGAACAGTT AGTCTTTAAC CCGTTCCAAT CTAGTGACAT TGTCACCGAC 
GTATCTGAGC AGGTGGACGT TCGCCATACC ACTCGTACCG ACTTCCATTT GCCTCTTGAC 
TACAAGGCAT GGCAGCAACA GTGTGATATT GAGTTGTTAC AAGCGGCACT CACGCAAGCG 
AAATTTAATC AAAAGCACGC CGCGCAGTTG CTGGGACTCA GCTATCATCA ATTTCGAGGC 
ATGATGAGAA AGTACCCACA AATGAACAGT GAAAACGCCT CACCTCACGT TGAGTGA 

 

Protein sequence

MQQSLLGESP AFLAVLDKVS RLAPIDRPVL IIGERGTGKE LIAQRLHYLS KRWEQPLVSL 
NCSTLSEGLI DSELFGHESG SFTGAKGRHQ GRFERAEGGT LFLDELATAP LSVQEKLLRV 
IEYGQYERVG GNQVLNANVR LVCATNANLP QMAQQGTFRA DLLDRLAFDV IHLPALRHRP 
EDIALLAEHF AIRMCRELQV PLFVGFSPNA LHQLQAYSWP GNVRELKNVV ERAVYQHGLN 
SQPIEQLVFN PFQSSDIVTD VSEQVDVRHT TRTDFHLPLD YKAWQQQCDI ELLQAALTQA 
KFNQKHAAQL LGLSYHQFRG MMRKYPQMNS ENASPHVE