| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1263 |
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| Symbol | |
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| ID | 5135825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1343457 |
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| End bp | 1344404 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640532721 |
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| Product | hypothetical protein |
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| Protein accession | YP_001217207 |
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| Protein GI | 147674063 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.00237907 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCAAT CTCTCTCAAT AGCAAGCCTA CTGGCGTTGC TGCTCAGTGC TTGTAGTGCA
GAAAACCCAC CTCAAGCATT AGGAACCCTA GAGCGCGATC GCATCACTTT CAGCGCAACC
AGTAACGAAA TCATTCGTGA ACTCCCCATC GCAGAAGGCG AGCACGTTAA AGTCGGTGAT
GTACTGGTCA AGCTCGATAG CCAGATCCAA ACGACCCTAT TGACTCAAGC ATTGGCACAA
CAAGCCAAAG CTCAGGCCTC ATTGACTAAA CTGACGAACG GCGAGCGACC CGAAGATATC
GCCGTTGCCC AAGCTCGCGT CGCGAAAGCA CGGGCGCAAC ACAAAGAAGC TGAATTGACA
CTAAACCGTA AAGCAGAGTT GGTGGCAAAA CGGTTGATCA GTCAATCGGA AGTGGATGCT
GCACGCTCAG CGCGTGATTC TGCGCAAGCA GAGTTGGCGT CGGCACATGA AGAATTCACT
AAATTGACCG CTGGAGCTCG AATCGAAGAC ATAGAACAAG CCAAAGCCGA ACTGGCCGTA
GCCCAAGCCA ATGTCACCTT GCAACAACAA AAACTCGATG AACTGACTAT CCTTGCCACC
CGCGATGGCA TTCTCGATAG TCTCCCTTAC CATCTTGGTG AACGCGTAGC GAACAATGCT
GTGGTCGCGA TTGTGCAAGC CGACCGCTTA CCGTACGCAC GGGTTTATGT GCCCGCAACT
CACCGCGCAG CGTTTGTGGT TGGCCAAACG GTGACCGTGC ATGTGGACGG CATCAAAGAT
CAATATCAAG GCAAAATTCG CTGGGTCGCG AATGAGCCTT CTTTTACTCC TTACTATGCG
TTAACAGAAA AAGAGCGCTC ACGTTTGATG TATTTGGCCG AAGTGGATCT GCCTGAGAGT
GCGATGGATC TGCCATCGGG TTTGCCCGCC CAAGTCGATT TGCCGTAA
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| Protein sequence | MIQSLSIASL LALLLSACSA ENPPQALGTL ERDRITFSAT SNEIIRELPI AEGEHVKVGD
VLVKLDSQIQ TTLLTQALAQ QAKAQASLTK LTNGERPEDI AVAQARVAKA RAQHKEAELT
LNRKAELVAK RLISQSEVDA ARSARDSAQA ELASAHEEFT KLTAGARIED IEQAKAELAV
AQANVTLQQQ KLDELTILAT RDGILDSLPY HLGERVANNA VVAIVQADRL PYARVYVPAT
HRAAFVVGQT VTVHVDGIKD QYQGKIRWVA NEPSFTPYYA LTEKERSRLM YLAEVDLPES
AMDLPSGLPA QVDLP
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