Gene VC0395_A1173 details

Gene Information

• Locus tag: VC0395_A1173
• ID: 5135389
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 1234200
• End bp: 1234901
• Gene Length: 702 bp
• Protein Length: 233 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640532631
• Product: ABC transporter, ATP-binding protein
• Protein accession: YP_001217119
• Protein GI: 147675008
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 38
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGTCTT TATCTCCTGC TCCTTTGGTG GAGCTACAGC AAATTTGTAA ACATTACACC 
AGTGGGCAAA ACGTGGTTAA AGCGCTTGAT GGCGTCGACT TAACCATTCG TCACGGTGAA 
TTCTTGGCAA TTCTCGGACC TTCGGGATCG GGTAAATCAA CCCTGATGAA CGTACTGGGC 
TGTTTGGATA AACCTACCGC GGGCCGCTAT CAATTGGACG GACATCCGGT CGATAGCCTA 
AGCACTCAGC AACTGGCTGC GATCCGCAAT CAAAAGATTG GTTTTGTGTT CCAAAGCTTC 
AACCTATTGG AATACGCCAG TGCTCTGGAT AATGTCGCCC TTCCTTTGGT GTATGCGGGA 
GTAAAAGCCA AAGATCGCCG TCGACGCGCC ACAGAACTCT TAACTCGAGT TGGCCTTGCG 
GATCGCTTAG ATCACAAACC CAATCAGTTG TCAGGCGGAC AAAAACAGCG CGTTGCGATT 
GCGCGCGCAC TGATCAATCA GCCACAAATT CTGCTGGCAG ATGAGCCAAC TGGTGCGCTG 
GATTCAAAAT CCGGTGCCGA AATTGAAGCG CTGTTCAATG AACTGCACCG CGAAGGTCGC 
ACCATTATCG TCGTCACTCA TGATAATGAG CTAGCCAAAC GTACTAAGCG AATTGTGACC 
ATTCGAGATG GGCAAGTCGT CAGTGATGAG CCCACGGCTT AA 

 

Protein sequence

MKSLSPAPLV ELQQICKHYT SGQNVVKALD GVDLTIRHGE FLAILGPSGS GKSTLMNVLG 
CLDKPTAGRY QLDGHPVDSL STQQLAAIRN QKIGFVFQSF NLLEYASALD NVALPLVYAG 
VKAKDRRRRA TELLTRVGLA DRLDHKPNQL SGGQKQRVAI ARALINQPQI LLADEPTGAL 
DSKSGAEIEA LFNELHREGR TIIVVTHDNE LAKRTKRIVT IRDGQVVSDE PTA