Gene VC0395_A1173 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1173 
Symbol 
ID5135389 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp1234200 
End bp1234901 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content50% 
IMG OID640532631 
ProductABC transporter, ATP-binding protein 
Protein accessionYP_001217119 
Protein GI147675008 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTCTT TATCTCCTGC TCCTTTGGTG GAGCTACAGC AAATTTGTAA ACATTACACC 
AGTGGGCAAA ACGTGGTTAA AGCGCTTGAT GGCGTCGACT TAACCATTCG TCACGGTGAA
TTCTTGGCAA TTCTCGGACC TTCGGGATCG GGTAAATCAA CCCTGATGAA CGTACTGGGC
TGTTTGGATA AACCTACCGC GGGCCGCTAT CAATTGGACG GACATCCGGT CGATAGCCTA
AGCACTCAGC AACTGGCTGC GATCCGCAAT CAAAAGATTG GTTTTGTGTT CCAAAGCTTC
AACCTATTGG AATACGCCAG TGCTCTGGAT AATGTCGCCC TTCCTTTGGT GTATGCGGGA
GTAAAAGCCA AAGATCGCCG TCGACGCGCC ACAGAACTCT TAACTCGAGT TGGCCTTGCG
GATCGCTTAG ATCACAAACC CAATCAGTTG TCAGGCGGAC AAAAACAGCG CGTTGCGATT
GCGCGCGCAC TGATCAATCA GCCACAAATT CTGCTGGCAG ATGAGCCAAC TGGTGCGCTG
GATTCAAAAT CCGGTGCCGA AATTGAAGCG CTGTTCAATG AACTGCACCG CGAAGGTCGC
ACCATTATCG TCGTCACTCA TGATAATGAG CTAGCCAAAC GTACTAAGCG AATTGTGACC
ATTCGAGATG GGCAAGTCGT CAGTGATGAG CCCACGGCTT AA
 
Protein sequence
MKSLSPAPLV ELQQICKHYT SGQNVVKALD GVDLTIRHGE FLAILGPSGS GKSTLMNVLG 
CLDKPTAGRY QLDGHPVDSL STQQLAAIRN QKIGFVFQSF NLLEYASALD NVALPLVYAG
VKAKDRRRRA TELLTRVGLA DRLDHKPNQL SGGQKQRVAI ARALINQPQI LLADEPTGAL
DSKSGAEIEA LFNELHREGR TIIVVTHDNE LAKRTKRIVT IRDGQVVSDE PTA