| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1170 |
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| Symbol | |
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| ID | 5136245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1230446 |
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| End bp | 1231705 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640532628 |
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| Product | putative outer membrane protein TolC |
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| Protein accession | YP_001217116 |
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| Protein GI | 147673121 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.109696 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAGG GCTTTCTCAC CGCGTGTGTA CTGACTAGCC TGATGGCATC TTCTTCTGCT
TTAGCGCTCT CCATCGAGCA AGCGTGGCAG CAAGCCAAAC AACAGTCACC CGATGCACAC
ATTGCCGAAC TCTCGGTGCA GCTCAGCGTG CAAGATAAGT ATCTCGCCAA AAGCGATCTC
CTTCCTTCAC TCTCAGGCAG TGCCGGAATG AACTGGTCAG AAAGCCAAAA TGGATCGAGC
AGTTATGGCG CCACCATTGA GCAAACCTTG TGGGATAGCC GAAAATGGAT CGCGTTGGAT
AAAGCCGATG CGGACTGGGT GTTAGCTCAA CTTGAACGTA ACCAAGCTTA TAACCAGCTC
GCTCATCAGT TACTCAGCGC TTATTTTGCC TTAGCGGAAG CGCAAAGTAA TTTGACTCTT
GCCCAGCAAA AACAAGCGGA TGGCGCACAA TTATTAGCCA TCGCTGAACA GCGTTATCTG
GCGGGTAAAA TAAAATCTGT GGAGTTGGAA GAGCTACGTG TCAACCAACT TGATGAAGAG
TCAACCATTC TCAATGCGCA GGCTGAACTC GAAACCAAAC GCAGCCAACT CTCAATACTG
ATCAATGCCT CAGCCCCGCA AGTGGATGAA GTGGATACCC ACACGCCAAC ACCGAGTTGG
CCATTCAGTG CTGAACTGGA TGACTGGCTT ACCGCCGCCA AAGATCACAG CCCTGAGCTC
TTGATTGCTA TCCAAAAAGT GGCGATCAGC CAAATTGCTA AGCAGCAGAG TCAAAGTGGG
TATTATCCGA GTTTGCGCGC CTCTGCAGGC TATCAAGACG GCGATCAACG AAACGGTGAA
TTCAATGCTG GTCTCACGCT CTCCATCCCG ATTGATTTAA ATGGAGCAAC CCGCAGTGAT
AACGAAAAAG CTCATCTCAA CTGGTTGATG GCTCAGCAAC AGCAACGCAA AGTCGAGATC
GGATTAGATC AAAATTTGCG TCAACAAATT CAGCAGGTTG AGATTGAATG GCAGCAAATT
ACCATGGCGG ATCAGCAAGT GACCCATCGC GATAAAGTGC TGCGCAGTAA ACAGCAACTG
TTTGATGCTG GCTTAGCCGA AGCCTCCGAT TTAATCGATG CGCACAACAG CCTATTTCGA
GCCAAACATA ATCTGGCCAG TCGTTGGTAT AGCTATTGGC GTCAGCGCAT TGAGCTACTC
AAATTAACAG GTCAGTTGAA CGATAATGCC ATCGCTCAGC TTTCAGGAGC CTTTCGTTAA
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| Protein sequence | MNKGFLTACV LTSLMASSSA LALSIEQAWQ QAKQQSPDAH IAELSVQLSV QDKYLAKSDL
LPSLSGSAGM NWSESQNGSS SYGATIEQTL WDSRKWIALD KADADWVLAQ LERNQAYNQL
AHQLLSAYFA LAEAQSNLTL AQQKQADGAQ LLAIAEQRYL AGKIKSVELE ELRVNQLDEE
STILNAQAEL ETKRSQLSIL INASAPQVDE VDTHTPTPSW PFSAELDDWL TAAKDHSPEL
LIAIQKVAIS QIAKQQSQSG YYPSLRASAG YQDGDQRNGE FNAGLTLSIP IDLNGATRSD
NEKAHLNWLM AQQQQRKVEI GLDQNLRQQI QQVEIEWQQI TMADQQVTHR DKVLRSKQQL
FDAGLAEASD LIDAHNSLFR AKHNLASRWY SYWRQRIELL KLTGQLNDNA IAQLSGAFR
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