| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1168 |
|---|
| Symbol | |
|---|
| ID | 5137007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1227971 |
|---|
| End bp | 1229143 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640532626 |
|---|
| Product | metallo-beta-lactamase superfamily protein |
|---|
| Protein accession | YP_001217114 |
|---|
| Protein GI | 147674576 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0415868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGTTT CTCATTTATC TTTTCCCCAC CTGATTGAGG AGAGAAAAAT GAAACTATCC
ACCTTAGCTT TAGCCCCTAT TACTGCAGCA CTACTTACTT TTAATGCAAG TGCTAAAGGC
CATGACCACG ACAATCAACG CGCGATTTTT TTCCCTGGTG AAACTGTTCA AGACACTGTG
AAAGTCGAAG TTGAGCCTTC TGCGACTCAG TCTCTGAAAC TGGGACAAAA AATTAATAAT
CTGTATGAGC GCCAGTTTGA TAACAGCCAA GCCACCGTTC AAAAATTGGG CAAGAATACC
TACTGGATAG GGGTCAATTA TTACAACGCT ACCGTTGTGG TTAACGAAGA CTCTGTCTTG
CTGATTGACC CACTAGGCGA TGGTCGTATT GATGCGCTTT TTAAAGGGGT GCAATCCATC
ACGAATAAAC CGATCACTAC GATTATGTAT TCTCACTACC ACTTAGATCA TTTAGGTGGT
GGCAACCAAC TGGTTGACTT AATTAAGAAA AATTATCCAA AAGTAGATAA AATCCGCGTT
ATTGCTAGCC AAACCGTTGC GGACAAGATC AACCAACACG CCGAAGTAGG CGAAAACGGT
GTGAAAACCC CGAAAGTTCC AGCGCCGAAT GACATATACG ACCTGACGAA GCCTCAAACG
GTTCAATTTG GCTCAATGAA AATCAAGATG ATGGCACCAA AAGGCTCTGG CCATACACCT
GATAACACCA TGATTCTGAT CCCAAGCGAT CGCGTGTTGC ATTTCGCGGA CATGATTAAT
CCCGATCAAC TACCGTTTTA CAATTTCGCG GGAGCAGAAC ATTTCCACGG TTACGAAGAA
GATCTACAAA GCCTTCTGAG CAAACCGCTG AGCAAACAGT GGGACTTTAT TAACGGTGGC
CATGGCAATA TAGGTTCGAA ACAGGATGTA AAAGATCTGC TTGAGTATAT TGCGGACATC
AGAACTGAAG TGGGCAAGCA GCTAGAAGTC GCCCCCTACA CTCCAGTGTT GAGTGACGGT
AACCACTTTG TTTGGTTCAA ACGCTGGCAA GATGAGATCA CTAACAATGT ACATACCGCA
CTGGTAAACA AGTATGGCCA CATGTACGGT TTCGATTCAG GCGTGGTTGA AACACACGCG
GCAATGATTC TCGCAGATAT GATTGATCAC TAA
|
|---|
| Protein sequence | MFVSHLSFPH LIEERKMKLS TLALAPITAA LLTFNASAKG HDHDNQRAIF FPGETVQDTV
KVEVEPSATQ SLKLGQKINN LYERQFDNSQ ATVQKLGKNT YWIGVNYYNA TVVVNEDSVL
LIDPLGDGRI DALFKGVQSI TNKPITTIMY SHYHLDHLGG GNQLVDLIKK NYPKVDKIRV
IASQTVADKI NQHAEVGENG VKTPKVPAPN DIYDLTKPQT VQFGSMKIKM MAPKGSGHTP
DNTMILIPSD RVLHFADMIN PDQLPFYNFA GAEHFHGYEE DLQSLLSKPL SKQWDFINGG
HGNIGSKQDV KDLLEYIADI RTEVGKQLEV APYTPVLSDG NHFVWFKRWQ DEITNNVHTA
LVNKYGHMYG FDSGVVETHA AMILADMIDH
|
|---|
| |