| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1057 |
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| Symbol | rtxD |
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| ID | 5137462 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 1103802 |
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| End bp | 1105205 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640532515 |
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| Product | RTX toxin transporter |
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| Protein accession | YP_001217003 |
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| Protein GI | 147674597 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 55 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCTT CAGCAAGAGC TCAAACAAGA GGAAGCCTCC GCATGAACAC CATCATGAAG
CGTTTCTTTG GTCAAAAGTC ACCACATCAA CCCACAGAAC ATCACTATGA GTTTTTGCCC
GCACATCTTG CTTTGGCTCA GCGTCCTCCC TCGCCTTTTG CTCGCGTGAC TGCGCTTACG
CTCAGCTTAG GTGTGCTCGC AGCCTTGCTC TGGGCGTATT GGGGAAAATT AGATGTACAG
GCCACCGCCA CTGGCCGCCT TGTTGTATCT GGGCGTTCGC AAGTGATTCA GTCTTATGAG
CAAAGCCGAC TGTTAAGCAT CCACGTCAGA GATGGTCAAC GAGTTGAAAA AGGCGCCCCA
TTGCTGACTC TTGATACCTT GGGCGTCAAT CAAGATATTA CGCGTTTGGT CAGCCAAGCA
GAGTTTCAAA CGAACGAGTT GATCCGCTAT CGCACCTTGC TTAATGACCA GCTCTTGACT
CATGACCCAA TGTTTACCGC TCTACCAGCC GAACAACAAG CTTTGATCCA TGAAAACTAT
CTCAGCGAAA AAAACGAATT CGACTCAACG CTGGCAAGCA TCACCGCCGA GATGAAGGTG
AACCGCACGT CGCAGGCCGC GCGCCAAAGC GATATCCATG CGTTGTTGCA GCTCACAGAA
AACATCAGTC AGCGCCTTGC TGCCCGCAAA AAGCTCAACC AAGTCAAAGT GATCGGTCAT
GTCGAGTATC TTGAACAAGA AAAAGAGCTG CTCGAAGCGC AGCGCCAAGT GGCCCAACAG
CGAGCCGAGC TGGAAGTGCT TAAATCGCAA TATGAAAGCC TTGAAGAGCG GCTAACGGGC
TTCAAAGCGC AAAAGCAGCG AGAGTGGTTG GAAAAGCGCA GACAGGCCAG ATTGCAATTG
GCTTCTTTAA ATCAAGAACT TTCTAAGGTT CGTGAGCGTG AGCAACTCGA AATCATCCGC
TCGCCCGTTG ACGGCACTGT GCAACAGTTG AGTGTCTATA CCCTTGGGGC AGTACTGCAA
CCGGCACAAA ACTTGATGAT CATTGTGCCT GAGAACCGTG TGCAACAGGC AGAAGTGCAA
ATTCTCAATA AAGATGTCGG TTTCGTGTAC CCAGGCCAAT CGGTCACGGT CAAAGTCGAT
GCCTTCCCCT ACACACGATA CGGCACAATC GATGCCGAGC TACTCAGTAT CTCGCGAGAC
TCAACAACAG ATGAACAGTT AGGGCTGGTG TTCCCTGCTC AAATTCAGCT AAAAACCAAC
CATATTATGA TTGATGGACA AACGGTCGAA CTCACTCCCG GCATGTCGGT CGTCGCGGAA
ATCAAAACCG ATAAACGACG TGTGATTGAC TATCTGCTTA GCCCGATTCA GGAATACCAA
GCTGAAGCGT TGAGGGAGAG ATAG
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| Protein sequence | MAASARAQTR GSLRMNTIMK RFFGQKSPHQ PTEHHYEFLP AHLALAQRPP SPFARVTALT
LSLGVLAALL WAYWGKLDVQ ATATGRLVVS GRSQVIQSYE QSRLLSIHVR DGQRVEKGAP
LLTLDTLGVN QDITRLVSQA EFQTNELIRY RTLLNDQLLT HDPMFTALPA EQQALIHENY
LSEKNEFDST LASITAEMKV NRTSQAARQS DIHALLQLTE NISQRLAARK KLNQVKVIGH
VEYLEQEKEL LEAQRQVAQQ RAELEVLKSQ YESLEERLTG FKAQKQREWL EKRRQARLQL
ASLNQELSKV REREQLEIIR SPVDGTVQQL SVYTLGAVLQ PAQNLMIIVP ENRVQQAEVQ
ILNKDVGFVY PGQSVTVKVD AFPYTRYGTI DAELLSISRD STTDEQLGLV FPAQIQLKTN
HIMIDGQTVE LTPGMSVVAE IKTDKRRVID YLLSPIQEYQ AEALRER
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