Gene VC0395_A1042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1042 
Symbol 
ID5137387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand+ 
Start bp1087261 
End bp1087920 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content44% 
IMG OID640532500 
Producthypothetical protein 
Protein accessionYP_001216988 
Protein GI147675006 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.000234707 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATCAA AATCTTACCT CCTACTTGCC CCTTTGTTTT TAAGCCTAAG TGCTCCAGCT 
TTGGCGCAGC AATATATGTT TACCTACAGC AAGTTGTTCT CTCAAATGAA AAGCAACACA 
AAAGAAGATC ATCCTGATGT AAAAATGGGG ATTTTCTTTG TTGATGCACA GAGTAAACAA 
AACTGCGTGA TAGAAAAAGC GTGGATGGAA AAGGAAGAAC ACTACGAAGA GTTACCTATT 
GGCCCTAGTA ATGAGCTGGT GATCCCACTC GATAACAATC TGAGACAGGC GAATCCACTG 
GTTTTTGTGA ATACACCGCA AGATAAACGC TGTGATTATT CTATGGTGGT GATGGCGAAA 
AAGTCGTTTG AGGGTAAAGT AACTTATCAG GAAGTCGAGG TCTTGTTGCC GCAGATGCAG 
GTAATGCTTG AACAGCTTGG CGGCATGTTC GCCAGTTGGT TTACGCCCGC GGTTGAAGGC 
GTTACCTTAG AATTCGTCCC AGAGACAGAG GGAATGATTA CGTTCAGTAA TGGTCAATCC 
ATTGCTATTG TGGATCACAA GGCGCAAGTA GCGCTAACGC AAATTGGTAA AGAAGGGTGG 
ATGCAACTGC CGGCTCCAGC TTTGCGAGTT TTACCTTACT TACCTTCTGC AAAAAAGTAA
 
Protein sequence
MKSKSYLLLA PLFLSLSAPA LAQQYMFTYS KLFSQMKSNT KEDHPDVKMG IFFVDAQSKQ 
NCVIEKAWME KEEHYEELPI GPSNELVIPL DNNLRQANPL VFVNTPQDKR CDYSMVVMAK 
KSFEGKVTYQ EVEVLLPQMQ VMLEQLGGMF ASWFTPAVEG VTLEFVPETE GMITFSNGQS 
IAIVDHKAQV ALTQIGKEGW MQLPAPALRV LPYLPSAKK