| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0983 |
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| Symbol | |
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| ID | 5137295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1018221 |
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| End bp | 1019552 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640532441 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001216929 |
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| Protein GI | 147675423 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 46 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATCAACT CATTAAACCG CAAAATGACG TTACTGTTTA TTGCATCACT GCTGTTAGTT
GGTTTTATTG CTTTCTCATT ACTGAACTTA GATCAGCGGC AGCAGCAAAC CAATGCTGAG
CTGGATACGA TTTTGGAAAT CCAAAACAGC ATTGCCATGT TGCGTAGCCA GCTCTGGGTC
TTTCTGCAAT ACAACGATGC TCATAGCTTA GAGCAGGTTT ATCGTGCGCA GCAGGTTTTG
GCTGGGCAGC TCGAGATGGA AACGGTCTTT GGGCAACACT TAGCCGGCAT CCAAAGAATG
AATAACAGTT TAGCCGGGCT ATTAGAACAA GAGCGCTACA TGGCCGAAGA ATCGGGCATT
ACTAAGTTGG TCGATGGCAT CGGAACTTAT GAGCTACTTC ACTCTCGATA CAATATTTTG
GTGCAAAACA TGAATGAGGA GTTGGCCTAT TTTCAGCGTC AAGTCATGGA AGAGAGCATT
AATAATCAAC GCTATTTATT GTTAACCACC ATGGCGCACT TACTGCTCTT CTCATCGGTT
GTCTGTGGTA TCGCGCTGGT GGTGTTACGC CGCTTCCGAC ATGGATGTAA AACTCTCCAA
GAAGGGATTG AACAAATGGC GAAAGGGGAT CTCGCCAGCC GAATTTCCAC TCAAAATAAT
GAACAAGAGT TTGTTCAATT AACTCAGTTT TTCAATCAAA TGAAGGCTTC GCTGCAAAGC
ACAACCGTTA CCAAAGATGA GTTACAAGCG GAAGTGGCAA GAAAAACCGC CAAATTAGAG
CGTCAAAAAG CGGAATTACG TTTCTTGTCA GAAAGAGATT CATTGACAGG TATTTTGAAC
CGCCGTGCCT TTAAACAGCA GCTTAGTCAC GCGTTAATTA AAGCGAAGCG CTCAAACATG
AAGCTGGCTT TGCTGTTTTT TGACTTAGAT AAATTTAAAG AAATCAATGA CACCAAAGGG
CACGAAGTAG GTGATCTTGT CTTGCAAGAA ATCGCTCAAC GGCTCAAAGG GTCGATACGA
GAATCGGATT TTTGTGGGCG CTTAGGGGGG GATGAATTTG TGGTATGCCT AGATCTGCTG
CAGGATCACA GTGGCGTTAT CAATAAGGCT TATCAGATGC TAGAAAAACT ACAAAAGCCG
CTTCAACTTA ACCAAGAGAG CTTAGAGATT GGGGTGAGTA TTGGTGTCGC CTTATATCCA
GAGCAAGCGA CCCAAGTACC TGAATTATTG CGTATTGCTG ATGAGGCGAT GTACACCGCA
AAACATCAAT CCGGCAATAC GGTGTATTGC GCCCACCAAG ATAAGCACGA TCACACCAGT
TTAGTGAGCT GA
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| Protein sequence | MINSLNRKMT LLFIASLLLV GFIAFSLLNL DQRQQQTNAE LDTILEIQNS IAMLRSQLWV
FLQYNDAHSL EQVYRAQQVL AGQLEMETVF GQHLAGIQRM NNSLAGLLEQ ERYMAEESGI
TKLVDGIGTY ELLHSRYNIL VQNMNEELAY FQRQVMEESI NNQRYLLLTT MAHLLLFSSV
VCGIALVVLR RFRHGCKTLQ EGIEQMAKGD LASRISTQNN EQEFVQLTQF FNQMKASLQS
TTVTKDELQA EVARKTAKLE RQKAELRFLS ERDSLTGILN RRAFKQQLSH ALIKAKRSNM
KLALLFFDLD KFKEINDTKG HEVGDLVLQE IAQRLKGSIR ESDFCGRLGG DEFVVCLDLL
QDHSGVINKA YQMLEKLQKP LQLNQESLEI GVSIGVALYP EQATQVPELL RIADEAMYTA
KHQSGNTVYC AHQDKHDHTS LVS
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