| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0622 |
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| Symbol | |
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| ID | 5136652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 664438 |
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| End bp | 665907 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640532080 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001216572 |
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| Protein GI | 147673586 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.237446 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCAGC GCATGAGTTT AACTTGGATT ATCTGTGCGC CACTGTTTAT CGTTTTTGTG
CTGGCCGCAT CGGTCTTTCA GCAATATCTG TACGATCTTA ACCAAGAAAT TGACGACGCC
TACGCTGACA TTCAACAGCA GCTTGAGCGC GCCGAAAAAG TGGTGACAGC GCTGGATTAC
ACTTTCACGC ATAATCAACG CCCGGCAGAG AATATATTGT TTAAACACTC AGCCCGTGTG
GTTGCGAATG TTTGCCAAAT CAAACCGATA GATGGGTTAG TTCTGGCTCA GGGGCTGAGT
TCCAGCTTTG CTGTTCCCAA ATTAGATCTA AGTTATATGC TGATTGGGGA TGCCTCGTTA
TGCGATTCCA AACCAAGTCA TGATCCCAGT TTACAAATCA AACTCTCCAT GGCTCCTATA
CTCTCGTTTT TGCATGACAT GGATGAATAT ATTTATGGTG TGCATTATGT GGATAGCAGC
GGTTATATCA TTTCATCGCC GGATACCATC AGCGAAAAGG TAACCTATCA GCAAATTAAA
GACTTTATCA GCGAGAGTCC TTTGTGGAGC CATGCGATTG CTGCCCCCAA TATGATTGCC
GTTGATGGGC CTTATCGCTC AGTGATCAGA GAGCAACATG AGTGGTTATT AACACTGATT
CTGCCCGTTT ACCGTGACGC GGATTATCAA GGACTCGTTG CGGTAGATAT TGGTTTACGC
GAACTGCTTA GCCGCATGCC TCATTTAGCA TCTCGTTTTG ACATGATTGA TTTGAATGAG
ATGGCTATTC CAACGTTTGC CTATCGTCCA CACAAGCTCA CCAGTGAATA TGCAGACTAT
CATCAGGTGG TATTTTATAA GTTGGATATT CAGTCCGAAT TGAGCAATTT TCTTACTGAG
AAGAGCGGTA ATTTACTGGT CGTTGCTCTG GTGTACCTCT TTCTCACAGG CGTACTTATC
TATCTCAATA CGCGCTGGGA TCGCCAGCAT TATGCGCAGC TCGCCGCGCG TGATCCGATG
ACGGGTTTAC TCAATCGACG TGGTATGGAA AGCTTTCTGA AAGGCAAACG CCACAGTCAA
TATTTAGCCA TTGCCGTGTT GGATATCGAT GACTTCAAAC AGATCAATGA TGCTTATGGT
CATGATATGG GGGATAGAGT GATCTGCTAC ATTGGTGAGC AGATTGAAAA CCATATTCGT
AGCTCAGATG CCGTGGCACG CTTTGGTGGC GAAGAATTTG TGGTTTATGT CACAGCAAAA
GAAAAAGAGC AGATCACGAG AATTATGCAG CGCATTTTTG ATGCGGTTTG CCGCGAGTCC
CCTTTAATAC TAGAGCCAGG TTTTACCATC TCTGGTGGGA TAGAGGTGGT TGAAAGTACA
ACCGATCGCA GTTTTGAAGA TTTGTTTAAA GCCGCTGATG AAAAGTTGTA TGTAGCGAAA
ACCAGCGGCA AAAATCAGTT GGTTTACTGA
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| Protein sequence | MNQRMSLTWI ICAPLFIVFV LAASVFQQYL YDLNQEIDDA YADIQQQLER AEKVVTALDY
TFTHNQRPAE NILFKHSARV VANVCQIKPI DGLVLAQGLS SSFAVPKLDL SYMLIGDASL
CDSKPSHDPS LQIKLSMAPI LSFLHDMDEY IYGVHYVDSS GYIISSPDTI SEKVTYQQIK
DFISESPLWS HAIAAPNMIA VDGPYRSVIR EQHEWLLTLI LPVYRDADYQ GLVAVDIGLR
ELLSRMPHLA SRFDMIDLNE MAIPTFAYRP HKLTSEYADY HQVVFYKLDI QSELSNFLTE
KSGNLLVVAL VYLFLTGVLI YLNTRWDRQH YAQLAARDPM TGLLNRRGME SFLKGKRHSQ
YLAIAVLDID DFKQINDAYG HDMGDRVICY IGEQIENHIR SSDAVARFGG EEFVVYVTAK
EKEQITRIMQ RIFDAVCRES PLILEPGFTI SGGIEVVEST TDRSFEDLFK AADEKLYVAK
TSGKNQLVY
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