| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0592 |
|---|
| Symbol | |
|---|
| ID | 5135749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 631354 |
|---|
| End bp | 633636 |
|---|
| Gene Length | 2283 bp |
|---|
| Protein Length | 760 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640532050 |
|---|
| Product | putative chitinase |
|---|
| Protein accession | YP_001216542 |
|---|
| Protein GI | 147674641 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3325] Chitinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGGTCAAT ACACCATCGA AGCGATCGCT TACGATGCAG CAGGTCATCA AACGCAAACC
CCAATGGTGA CAGTGAACGC CAAAGAAATG GGCACGGGCA ACCTAAGTTG TGACATCAAA
CAGATCTATC GTGAAGATGG CACTGAGTGT ATGGGTGACG ATCACCCGCG CCGTATCATC
GGTTATTACA CCTCATGGCG TACTGGTAAA AACGGTCTGC CAGCGTACCT CGCCGGCGAT
CTGCCTTGGG AAAAACTGAC CCACATTAAC TACGCGTTCG CCAGCATCAA CAAGTCTGAC
TTCAGCATGC AAGTGGATGA TTCCGCGACC AAGATGACGT GGGAAAATGT ACCGGGTGCC
GAGATGGATC CTTCACTGCC ATACCAAGGT CACTTCAACC TGCTGAGCAA GTTTAAGAAA
CAGTACCCCG ATGTGAAAAC GCTGATTTCT GTCGGTGGTT GGGCGGAAAC CGGTGGTTTC
TATCCAATGA CGACCGATCT GGCTTCTTGT TCAGTGAACA TGGAAGGCAT CAAGGCGTTC
AACAAATCGG CGGTCGATTT CATCCGTCAA TACGATTTTG ATGGCGTGGA TATCGACTAC
GAATACCCAT CATCAATGAA AGATTCCGGT AATCCGGTCG ATTTCGAGCA GTCGAACAAG
TGTCGTGGCC AGTTGTGGGA TAACTACATG GTGATGATGA CCGAACTGCG CAAAGCGCTG
GATAAAGCGG GCGAAGAAGA TGGCCGTCGT TATATGCTGA CTATCGCGTC ACCTTCATCA
GCTTACCTGC TGCGTGGTAT GCAAGACTTC GCGATGCAAG ATGTACTGGA TTACGTCAAC
ATCATGTCTT ACGACCTGCA TGGTACGTGG AACGAGTTTG TCGGCCCACA AGCCGCACTG
TTTGATGATG GTAAAGATGC TGAGCTGGCC AAATGGGGCG TGTACACGAC TGCAGAATAT
CAAGGCATTG GCTACTTAAA CCAAGCGTGG ACGCACCACT TCTTCCGTGG CGCCTTTAAA
CCAAGCCAAA TCAACATGGG GATTCCTTAC TACACCCGTG GCTGGCAAGG CGTGAGCGGC
GGCGATAAAG GTCTATGGGG TCGTGCGGTT GAGCCAAACC AATCGTCATG TCCAGAAGGC
ACCACTGTTT GTGGTTGGGG CGCGGAAGGT ACCGATAACA TCTGGCATGA TGTGGATGCC
AACGGTAACG AAATCAAAGC CGGTGTGGTA CCCATGTGGC ACGCGATGAA CCTGATGCAC
GCTGAAAAAT TGGGTATTGA CGGTATGCCA AGTTACGGCC CAGCGTGGGG TATGGATCCA
AACAACCCGA AACACCTGAT TGAAGGCAAA TACGAGCGTG TGTGGAGTCA AGAGCTGCAA
ACGGCATGGC TTTGGAACGA CACCAAAAAA GTATTCCTGA GCATTGAAGA TAAAGACTCA
CTGAAGCCAA AACTGGATTA CATCGTCGAT AACGGTTTAG GCGGCATGAT GATTTGGGAG
ATGGCGGGTG ACTACTCGTA TGATGCGGTG AAACGCGAAT ACGTGATCGG TTCTGACATG
ACTTCTTATG CCCATGAAGT GTTTGCCGCG GCGAAGCCGA TGGATATTCG TCATAACGAT
CTGCCACAAC CAGACTCGGT GATTGACGTT ACGGTATCGA CCACAGAATG GCCAGAAGGC
GATAGCAACT ACCCAATCAA CCCGAAATTG GTGTTTACCA ACCACTCAAA TGTGGCGATT
CCGGGTGGTT CTACGATTGA GTTCCTGATG CCAACGTCAA CCGGTGATAT CGTCAAAGAT
TGGAGCGGTG CTGGTCTGAA AGTGATTGAA AGCGGTCATA CCGGCAGCAA CTTCTCGGTG
AATGGTGAGA AGAAACTGTT CCACAAAGTG GCCGTGACAC TGCGCTCAAC CGAAACGATC
CCTGCGGGCG GTGAGTACAG CGTCGATATG GTGTACTACA CCCCAGTCTC TGGCGTGGCT
AACGGCGTGC GCTTTATCGT GGGTAACGAA ACGGTCGGCT TGAAGAAAGA CTTCCCAACA
TTGCCAGCGT TTGAAGGTGC CACCGATGGC GGCAATGGGA ACGAAGGCGG TGCGGGTCAA
TCTTGTGCCG ATGCCGGCAT CAACCCTAAT GGCTTGAAAG TGTACCCAGA GTTTCCACGT
GGCGACCACG CGGCAGGCGG TGACCAACTG ATCCACAATG GTTCTGTATG GCAAGCCAAC
TGGTGGACGA ACAGTACACC ATCCAGCGCC GATGCATCAT GGAAAGCGGT GTGCAAAATC
TAA
|
|---|
| Protein sequence | MGQYTIEAIA YDAAGHQTQT PMVTVNAKEM GTGNLSCDIK QIYREDGTEC MGDDHPRRII
GYYTSWRTGK NGLPAYLAGD LPWEKLTHIN YAFASINKSD FSMQVDDSAT KMTWENVPGA
EMDPSLPYQG HFNLLSKFKK QYPDVKTLIS VGGWAETGGF YPMTTDLASC SVNMEGIKAF
NKSAVDFIRQ YDFDGVDIDY EYPSSMKDSG NPVDFEQSNK CRGQLWDNYM VMMTELRKAL
DKAGEEDGRR YMLTIASPSS AYLLRGMQDF AMQDVLDYVN IMSYDLHGTW NEFVGPQAAL
FDDGKDAELA KWGVYTTAEY QGIGYLNQAW THHFFRGAFK PSQINMGIPY YTRGWQGVSG
GDKGLWGRAV EPNQSSCPEG TTVCGWGAEG TDNIWHDVDA NGNEIKAGVV PMWHAMNLMH
AEKLGIDGMP SYGPAWGMDP NNPKHLIEGK YERVWSQELQ TAWLWNDTKK VFLSIEDKDS
LKPKLDYIVD NGLGGMMIWE MAGDYSYDAV KREYVIGSDM TSYAHEVFAA AKPMDIRHND
LPQPDSVIDV TVSTTEWPEG DSNYPINPKL VFTNHSNVAI PGGSTIEFLM PTSTGDIVKD
WSGAGLKVIE SGHTGSNFSV NGEKKLFHKV AVTLRSTETI PAGGEYSVDM VYYTPVSGVA
NGVRFIVGNE TVGLKKDFPT LPAFEGATDG GNGNEGGAGQ SCADAGINPN GLKVYPEFPR
GDHAAGGDQL IHNGSVWQAN WWTNSTPSSA DASWKAVCKI
|
|---|
| |