| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0588 |
|---|
| Symbol | |
|---|
| ID | 5135923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 628035 |
|---|
| End bp | 628532 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640532046 |
|---|
| Product | putative phosphatase |
|---|
| Protein accession | YP_001216538 |
|---|
| Protein GI | 147675100 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2453] Predicted protein-tyrosine phosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCATC CTACTTGGGA ATTACCGGTA GCCGACAATC TGGCGAGTTT AGTGCTCACA
CCTTGCCCGG GAACCAAAGG TACACCACTG CCGGAAAGCA TTGCCCAACT CAAAGCGCAA
GGGGTTTCGG CAGTAGTCAC GGCGCTAAGC CATGAGGAAA TGGAGCAGCA TGGTGTCGGT
GAGCTACCAG CGGAAGTCGA AAAAGCCGGA TTACAGTGGT TTCATGCGCC GATCGAAGAT
GATTGCGCGC CGGATGCGGC CTTTGCGCAA GATTGGCAGC ATTGCTCACC CGCTTTGCAT
CAGGCACTCA GCCGCGGTGA AAAAGTCGCT TTGCATTGCA TGGGAGGTTC GGGTCGTACT
GGCTTACTGG CCGCGCATCT GCTGCTGGAA AAAGGTTGGC CGCTGGAAAG CATCATTACT
CAGGTGCAAG CATTAAGGCC GGGTGCATTT ACCAAAGAAG TGCAAGTGCA GTACGTGCAT
CAAATCGTCA AACCATAA
|
|---|
| Protein sequence | MTHPTWELPV ADNLASLVLT PCPGTKGTPL PESIAQLKAQ GVSAVVTALS HEEMEQHGVG
ELPAEVEKAG LQWFHAPIED DCAPDAAFAQ DWQHCSPALH QALSRGEKVA LHCMGGSGRT
GLLAAHLLLE KGWPLESIIT QVQALRPGAF TKEVQVQYVH QIVKP
|
|---|
| |