Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0557 |
Symbol | asmA |
ID | 5136650 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 597287 |
End bp | 599398 |
Gene Length | 2112 bp |
Protein Length | 703 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640532015 |
Product | asmA protein |
Protein accession | YP_001216507 |
Protein GI | 147674400 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.00432882 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAC TGTTTATTTC TCTTCTCGGT TTAGTTGTGC TGATTGTTGG CGCACTGCTG GCCTTAGTGT TGTTGGTTAA CCCCAACCAA TTTAAACCTT TAATCGTAGA GCAAGCCAAA AAACAAACTG GCTTAGATTT GGTGATTGAA GGCGATATTG GCTGGCAATT TTTCCCATCT ATCGGTTTTG AGTTAGGCAA AACCGAGCTG AAAAACCCGC AAGGTTTTGC TAGCCCAAAC CTGTTTAAAG TTGAGAGTGT GGGTATTGAT GTCTCAGTGA TGCCACTGCT CGATAAACAG CTCAAAATCG GCAACATCCG TTTGGATGGC GCAGAGTTCC ATCTGGAAAC GCTTAAAGAT GGTCGCTCCA ATTTGGATGC CTTGACGCAA GCGCAATCTA AACCCGCGTC CGCGCCAGCG ACAACCGACT CTGCACCCGC TTCTCAGCCA AGCTCAAGCG AGCCAGCCGC GGCGTGGAGT ATTGAATTAG GGGGCGTGTC TGTCTCCAAT GCGGTGTTGG AAATAACGGA TAAAAAAGCG GGTTCGCATA CCAAGCTGTA TGACGTTCAA CTGAGCGTTG CTGAGTTTGT GCCAGACAGC TGGACGAAAG CGACCTTTGC CGCGAAAGGC GATAAAGATC AGCAAAAGTT TGCCGCGCAA GGTGAAGCGG AAGTGCGCCT ATCGGCGGAT TTCAAGCAGT ATGCGCTGCG TGACATTAAG CTTGATGCGA GCTTTAGTGA TCCGAGTAAC CAAATCGATT CAGTCAAACT GAAACTCGAC ACCTTTGAGT TTGATAAAGC CAATGCGCTG ACCTTCTCTG TGGCGGGTAA AGCGGCAGAC ATGAAGCTTA ATGCGCAAGG TTCTGCCTCA TTGATGGTCA ATCAAGCGAT GAGCAAAGTG GGTTTGGATG CGCTGAAACT GCAAGCCGAA CTGGAAGGGG CTGCGTTACC GCAATCACCG ATGAAGTTAA GTTTAGACTC TCAAATTGCT TTCGATTTGA CACAAAACCA TCTCAGTGTG CTGCTCAACA AACTAACGGC TAATGCGCTA AGTTTCGATG GCAAAGCGGA TGTCACTCTC GCAGATATTC CGAAAGTGCG TTTCAACTTG CACAGCCCTG AGATTGACTT GGATGCCTTC TTAGGCACGA AAGCTCAAGA GTCGCAACCT GCGCCAGCCA AGGAAGCAGC GGCATCCTCA GCGTCAGCAC CCGTGACAAA TGCCCCAGCA GAAGTGGAAC CGGACTTGTC GGCACTCAAC GCCTTGGATG TGGCCGGTGA GATCAGCATT GATAAATTCA AAGCCAGCAA CGCCCATCTG CAAAATGTAA AAGCGAATTT TGCGGTCAAT CGTGGCGTGG TGGATTTGAA ATCCTTCACC GCGAATCTGT ATCAAGGATC CGTGCAAGCT AGCGCGCAAG TGGATGCGCG TAAAACGCCC GCGACTTACA GTGTGAAGAA GCAGATCAAA GGGGTACAGG TTAAGCCTTT ACTAAAAGAT GTGCTGAACA ACGAAATGCT AGAAGGGACA GGCAATATTG ATATGAATGT GCAAGGCCAG AGCCTAACAC CAAGCGGCAT CCAGAAAAAT CTGGTTGGTA CTGTGGCGAT TAACTTTGCC GATGGTGCGG TGAAGGGCAT TAACGTGGCG CACTTGATTC GTACCCACTA CGCCAAGATC AAAGGCCAAA ATGTTGAAGA AGCGGATGCG GTAAAGAAAA CCGACTTTAG TGCGATGACG ACGACGCTGA AACTCAATAA AGGTGAAGTA ACGACCAACG ATCTTAATAT GCAATCGCCA TTGCTGCGCA TTCATGGTGA AGGTAAAGCC AATTACCTAC AGCAGAATGT CGATTTTCTG GTGCGTACTT CGATTGTTGG AACCTTGGAA GGTCAGGGCG GTAAGAGTTT AGATGAGCTG CGCGATGTGA CTATCCCGAT CAATATTTCA GGTGCGTGGA GCGATCCGAA GTTCCGTTTG GTGTTTGATG ATGTACTCAA ACAAAAAGCC AAGAAAGAAG TGGATCGCGG CGTGGAAAAA CTGACCGATA AAATCAAAGA TGAAGACACC AAAAAAGCGG TGGATGGGTT GCTAAAAGGT CTATTTAACT GA
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Protein sequence | MKKLFISLLG LVVLIVGALL ALVLLVNPNQ FKPLIVEQAK KQTGLDLVIE GDIGWQFFPS IGFELGKTEL KNPQGFASPN LFKVESVGID VSVMPLLDKQ LKIGNIRLDG AEFHLETLKD GRSNLDALTQ AQSKPASAPA TTDSAPASQP SSSEPAAAWS IELGGVSVSN AVLEITDKKA GSHTKLYDVQ LSVAEFVPDS WTKATFAAKG DKDQQKFAAQ GEAEVRLSAD FKQYALRDIK LDASFSDPSN QIDSVKLKLD TFEFDKANAL TFSVAGKAAD MKLNAQGSAS LMVNQAMSKV GLDALKLQAE LEGAALPQSP MKLSLDSQIA FDLTQNHLSV LLNKLTANAL SFDGKADVTL ADIPKVRFNL HSPEIDLDAF LGTKAQESQP APAKEAAASS ASAPVTNAPA EVEPDLSALN ALDVAGEISI DKFKASNAHL QNVKANFAVN RGVVDLKSFT ANLYQGSVQA SAQVDARKTP ATYSVKKQIK GVQVKPLLKD VLNNEMLEGT GNIDMNVQGQ SLTPSGIQKN LVGTVAINFA DGAVKGINVA HLIRTHYAKI KGQNVEEADA VKKTDFSAMT TTLKLNKGEV TTNDLNMQSP LLRIHGEGKA NYLQQNVDFL VRTSIVGTLE GQGGKSLDEL RDVTIPINIS GAWSDPKFRL VFDDVLKQKA KKEVDRGVEK LTDKIKDEDT KKAVDGLLKG LFN
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