| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0446 |
|---|
| Symbol | |
|---|
| ID | 5137100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 474594 |
|---|
| End bp | 475676 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640531904 |
|---|
| Product | putative polysaccharide export protein |
|---|
| Protein accession | YP_001216397 |
|---|
| Protein GI | 147673440 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGTACTGA GTGCTTTATT GTCGGTTAAA TCGATATTTC AATACCAGTT AGAATTAAGT
CGCTTAAATG AGCGATTGAG CGTTTATCGT CAAGCGACCG TATTGCAGTC AATTTCAGCG
GTAGTGCTCT CCATCCTTTC GCTCTCTTGG GCGGCGACTA TTGAGTCTGC GTTATTTGCT
TTAACCTTGA GCTTTGGCAT TGGGGCTTTG TGTCTGGGTT TACCTCAGCG GCCTAAATGG
CATATTGCAA TGTTAAAGCG TTTGCTTGCT TATGGTATTC CGATCATGTT GGCTGGGGGA
ATTGGTGTAC TGGGTGGACG AATCGATCGT TTATTTATCG CTCATTTTGT TGGGATGAAT
GAAACCGGTG TTTATGCTGC GCAAGCTAAC TTATTGATGG GGGTTTTGGG GCTCGTTTTT
ATGGTGATTT CTATGCCTCT CTACCCTAAC TTAGCCAAAC ATGCGGAAGA TAAAATCGCT
CTTGTGAGTC AGCATAAAAC CTATCTGCAT TTACTGGTTA CCCTTACTTT TCCAGCTTTA
CTTGGTCTTG GCATATTACA AGATGAGATC ATTAGGCTCT TTTTGGGTGA GCAATATCTG
AGTCGTTCTA GCGAACTATT CTGGGTGTTA GCGATCGCTG TTTATCTGAT TAATTTTAAA
GGTCATTACC TTGATCATGG TTTACAGTTT CTATTACAGA CTCGCAAGCT GCTATGGGTT
TCTCTCTCGG GCTTAATCGC GAGCATTTTC CTACTACCTT TGATGCTCAA TCAATTTGGC
ATGTTCGGCG CGGCTATCAC CTTGCTTATA GTGAGTGGCT TAGTCGCAAT ACTCTCTTTT
ATTAGCTCAT GGCGATCGGG GTATCGTTAT GCTATCGGCA TGGATGGCAT CAAAGTGATC
ATTTCGGCAC TGCTGATGGG TGGCTACTTA TACCTAGTGA AACAGTGGCC ATTGGCGATC
CATTCGTTAT TCGCTCTAGC CTTTTATGTC ACTACCTCAT TGTTGTTTTA TGGTATCTGT
TTGTGGTGCT TGAATGCTTT TAATGCACGT CAGCGTTTAT TCTCAATCTG GAGGCCTAAT
TGA
|
|---|
| Protein sequence | MVLSALLSVK SIFQYQLELS RLNERLSVYR QATVLQSISA VVLSILSLSW AATIESALFA
LTLSFGIGAL CLGLPQRPKW HIAMLKRLLA YGIPIMLAGG IGVLGGRIDR LFIAHFVGMN
ETGVYAAQAN LLMGVLGLVF MVISMPLYPN LAKHAEDKIA LVSQHKTYLH LLVTLTFPAL
LGLGILQDEI IRLFLGEQYL SRSSELFWVL AIAVYLINFK GHYLDHGLQF LLQTRKLLWV
SLSGLIASIF LLPLMLNQFG MFGAAITLLI VSGLVAILSF ISSWRSGYRY AIGMDGIKVI
ISALLMGGYL YLVKQWPLAI HSLFALAFYV TTSLLFYGIC LWCLNAFNAR QRLFSIWRPN
|
|---|
| |