| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0385 |
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| Symbol | |
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| ID | 5135716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 414965 |
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| End bp | 415519 |
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| Gene Length | 555 bp |
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| Protein Length | 184 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640531843 |
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| Product | putative type IV pilin |
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| Protein accession | YP_001216340 |
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| Protein GI | 147675478 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATTCATC ATCCTCTCAC GGTTTGCAAA GGATTTTGGG AAATGCATCG CGGCTTTACT
TTGCTGGAGC TTTTGATCAC CGTTGCGGTA TTAACCACAA TGTTGCTTTT TGCTGCCCCC
AATTTCTCAA AGGTGAGCCA GCAAACGAAG ATGACCAATT TAGCCAATGA ATTACAGGGA
TTCCTTATTC AAGCTAAATC TGAAGCTGTT TTTCGAAATC AGGACTTATG GGTGCATATT
CAAGGATTGC CTTCTATAAC GGGTCAATGG CAACTGGTGC TATCCAGCGT ATCGGATGTG
GCAGCGATCG ATGCAAGTAA TACGGTTGCT CTGTTGCAAG GTCAGCGATA TCAAAATGTA
TTTGTATCGA AGACCAATAC ACTAACAGAG GTCAAATTTG ATCATGTAAT GGGCAATCCT
CAGGAAGCAG GTAGCCTTTT TATTAAACCG TCGGAATCTG CTGCAGATTC AATCAAAGTG
ACTGTGCACA ATCGGGCTGG ACGAATCAAA GTTTGCACCG AAAATGAGGC AAAATATGGC
TTTGAAAAGT GCTAA
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| Protein sequence | MIHHPLTVCK GFWEMHRGFT LLELLITVAV LTTMLLFAAP NFSKVSQQTK MTNLANELQG
FLIQAKSEAV FRNQDLWVHI QGLPSITGQW QLVLSSVSDV AAIDASNTVA LLQGQRYQNV
FVSKTNTLTE VKFDHVMGNP QEAGSLFIKP SESAADSIKV TVHNRAGRIK VCTENEAKYG
FEKC
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